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Metagenome

ABSTRACT: Bacterial communities in the cultivated wood logs of Grifola frondosa

PROVIDER: PRJDB16284 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR494367_1.fastq.gz	Fastqsanger.gz
	DRR494367_2.fastq.gz	Fastqsanger.gz
	DRR494368_1.fastq.gz	Fastqsanger.gz
	DRR494368_2.fastq.gz	Fastqsanger.gz
	DRR494369_1.fastq.gz	Fastqsanger.gz

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Transcriptomic and proteomic analysis of Trametes versicolor interacting with a Hypholoma fasciculare mycelium foraging in soil

Project description:The decomposition of large woody material is an important process in forest carbon cycling and nutrient release. Cord-forming saprotrophic basidiomycete fungi create non-resource limited mycelial networks between decomposing branches, logs and tree stumps on the forest floor where colonisation of new resource is often associated with the replacement of incumbent decay communities. Cord-forming species often dominate competition hierarchies in controlled paired antagonism experiments and have been shown to translocate resource to support colonisation and produce inhibitory metabolites. To date, antagonism experiments have mostly placed competing fungi in direct contact, while in nature cord-forming saprobes encounter colonised wood as mycelia in a network. Here we used soil-based microcosms that allowed foraging cord-forming Hypholoma fasciculare to encounter a wood block colonised by Trametes versicolor and conducted transcriptomic and proteomic analysis of the interaction. Cellular processes and metabolic responses to the competitive interaction were identified, where protein turnover featured strongly for both species. H. fasciculare demonstrated an exploitative profile with increased transcription of enzymes that targeted carbohydrate polymers of the substrate and in RNA and ribosome processing. T. versicolor showed a shift in signalling, energy generation and amino acid metabolism. Putative genes involved in secondary metabolite production were identified in both species. This study highlights the importance of ecologically-relevant experimental design when considering complex processes such as community development during wood decomposition

2024-09-20 | GSE245088 | GEO

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