Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fish metagenome strain:Plecoglossus altivelis

ABSTRACT: Microbiome analysis of ayu, Plecoglossus altivelis infected with Flavobacterium psychrophilum

PROVIDER: PRJDB16637 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR503563_1.fastq.gz	Fastqsanger.gz
	DRR503563_2.fastq.gz	Fastqsanger.gz
	DRR503564_1.fastq.gz	Fastqsanger.gz
	DRR503564_2.fastq.gz	Fastqsanger.gz
	DRR503565_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 255

Similar Datasets

Plecoglossus altivelis altivelis

Project description:Plecoglossus altivelis altivelis Assembly

| PRJNA513406 | ENA

Plecoglossus altivelis

Project description:Transcriptome profiling of head-kidney macrophages in Plecoglossus altivelis(ayu)

| PRJNA80185 | ENA

Plecoglossus altivelis altivelis

Project description:Plecoglossus altivelis altivelis EST (SSH library)

| PRJDB6940 | ENA

Plecoglossus altivelis

Project description:Plecoglossus altivelis overview

| PRJNA78033 | ENA

Plecoglossus altivelis

Project description:Plecoglossus altivelis Transcriptome

| PRJNA257001 | ENA

Plecoglossus altivelis

Project description:Transcriptomic Insights into Post-Spawning Aging and Muscle Atrophy in Ayu Plecoglossus altivelis

| PRJDB19565 | ENA

Plecoglossus altivelis

Project description:Whole-genome sequencing and mapping of sex determining locus in ayu / sweetfish, Plecoglossus altivelis

| PRJDB9085 | ENA

Plecoglossus altivelis

Project description:Ovary Transcriptome of Plecoglossus altivelis

| PRJNA786962 | ENA

Plecoglossus altivelis

Project description:Comparative and functional analysis of exosomal microRNA during semelparous reproduction in Ayu fish (Plecoglossus altivelis)

| PRJDB18896 | ENA

Comparative transcriptome analysis on alteration of gene expression in ayu (Plecoglossus altivelis) larvae associated with salinity change

Project description:Ayu (Plecoglossus altivelis), an amphidromous fish distributed in East Asia, live in brackish water (BW) during the larval stage and in fresh water (FW) during the adult stage. In this study, we found that ayu larvae of FW acclimation exhibited a slower growth ratio compared with BW acclimation. However, the mechanism underlying FW acclimation on growth suppression is less known. We employed transcriptome analysis to investigate the differential gene expression of FW acclimation by RNA sequencing. We identified 158 up-regulated and 139 down-regulated transcripts in FW acclimated ayu larvae compared with BW acclimated ones. As determined by Gene Ontology annotation and Kyoto Encyclopedia of Genes and Genomes pathway mapping, functional annotation of the genes covered diverse biological functions and processes. They were involved in in neuroendocrinology, osmotic regulation, energy metabolism, and the cytoskeleton. Transcriptional expression of several differentially expressed genes in response to FW acclimation was further confirmed by real-time quantitative PCR. In accordance with the transcriptome analysis, iodothyronine deiodinase (ID), pro-opiomelanocortin (POMC), betaine--homocysteine S-methyltransferase 1 (BHMT), fructose-bisphosphate aldolase B (aldolase B), tyrosine aminotransferase (TAT), and Na+-K+ ATPase (NKA) were up-regulated after FW acclimation. Furthermore, the mRNA expressions of b-type natriuretic peptide (BNP) and transgelin were down-regulated after FW acclimation. In conclusion, our data indicate that FW acclimation reduces the growth rate of ayu larvae, which may result from the expression alteration of genes related to endocrine hormones, energy metabolism, and direct osmoregulation.

2016-12-20 | GSE73321 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data