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Anaerobic ammonium-oxidizing bacterium enrichment culture

ABSTRACT: Inhibition on the Anammox Activity

PROVIDER: PRJDB17657 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR538502_1.fastq.gz	Fastqsanger.gz
	DRR538502_2.fastq.gz	Fastqsanger.gz
	DRR538503_1.fastq.gz	Fastqsanger.gz
	DRR538503_2.fastq.gz	Fastqsanger.gz
	DRR538504_1.fastq.gz	Fastqsanger.gz

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anaerobic ammonium-oxidizing bacterium enrichment culture

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anaerobic ammonium-oxidizing bacterium enrichment culture

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anaerobic ammonium-oxidizing bacterium enrichment culture

Project description:anaerobic ammonium-oxidizing bacterium enrichment culture overview

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uncultured anaerobic ammonium-oxidizing bacterium

Project description:anammox microbial aggregates Raw sequence reads

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Isolation of a multiheme protein with features of a hydrazine-oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture.

Project description:A multiheme protein having hydrazine-oxidizing activity was purified from enriched culture from a reactor in which an anammox bacterium, strain KSU-1, was dominant. The enzyme has oxidizing activity toward hydrazine but not hydroxylamine and is a 130-kDa homodimer composed of a 62-kDa polypeptide containing eight hemes. It was therefore named hydrazine-oxidizing enzyme (HZO). With cytochrome c as an electron acceptor, the V(max) and K(m) for hydrazine are 6.2 +/- 0.3 micromol/min.mg and 5.5 +/- 0.6 microM, respectively. Hydrazine (25 microM) induced an increase in the proportion of reduced form in the spectrum, whereas hydroxylamine (500 microM) did not. Two genes coding for HZO, hzoA and hzoB, were identified within the metagenomic DNA from the culture. The genes encode the same amino acid sequence except for two residues. The sequences deduced from these genes showed low-level identities (<30%) to those of all of the hydroxylamine oxidoreductases reported but are highly homologous to two hao genes found by sequencing the genome of "Candidatus Kuenenia stuttgartiensis" (88% and 89% identities). The purified enzyme might therefore be a novel hydrazine-oxidizing enzyme having a critical role in anaerobic ammonium oxidation.

| S-EPMC1828659 | biostudies-literature

Anaerobic ammonium oxidation coupled to iron(III) reduction catalyzed by a lithoautotrophic nitrate-reducing iron(II) oxidizing enrichment culture.

Project description:The last two decades have seen nitrogen/iron-transforming bacteria at the forefront of new biogeochemical discoveries, such as anaerobic ammonium oxidation coupled to ferric iron reduction (feammox) and lithoautotrophic nitrate-reducing ferrous iron-oxidation (NRFeOx). These emerging findings continue to expand our knowledge of the nitrogen/iron cycle in nature and also highlight the need to re-understand the functional traits of the microorganisms involved. Here, as a proof-of-principle, we report compelling evidence for the capability of an NRFeOx enrichment culture to catalyze the feammox process. Our results demonstrate that the NRFeOx culture predominantly oxidizes NH4+ to nitrogen gas, by reducing both chelated nitrilotriacetic acid (NTA)-Fe(III) and poorly soluble Fe(III)-bearing minerals (γ-FeOOH) at pH 4.0 and 8.0, respectively. In the NRFeOx culture, Fe(II)-oxidizing bacteria of Rhodanobacter and Fe(III)-reducing bacteria of unclassified_Acidobacteriota coexisted. Their relative abundances were dynamically regulated by the supplemented iron sources. Metagenomic analysis revealed that the NRFeOx culture contained a complete set of denitrifying genes along with hao genes for ammonium oxidation. Additionally, numerous genes encoding extracellular electron transport-associated proteins or their homologs were identified, which facilitated the reduction of extracellular iron by this culture. More broadly, this work lightens the unexplored potential of specific microbial groups in driving nitrogen transformation through multiple pathways and highlights the essential role of microbial iron metabolism in the integral biogeochemical nitrogen cycle.

| S-EPMC11366258 | biostudies-literature

uncultured anaerobic ammonium-oxidizing bacterium

Project description:uncultured anaerobic ammonium-oxidizing bacterium overview

| PRJNA359227 | ENA

uncultured anaerobic ammonium-oxidizing bacterium

Project description:uncultured anaerobic ammonium-oxidizing bacterium Raw sequence reads

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Draft Genome Sequence of a Novel Marine Anaerobic Ammonium-Oxidizing Bacterium, "Candidatus Scalindua sp."

Project description:A novel anaerobic ammonium-oxidizing (anammox) bacterium was detected in an upflow column reactor treating synthetic nitrogen-rich saline solution. Here, we assembled a 4.59-Mb draft genome sequence of this bacterium, identified as a member of the genus "Candidatus Scalindua," that has 84% nucleotide-level genomic similarity with the closest related anammox bacterium ("Candidatus Scalindua rubra").

| S-EPMC6522788 | biostudies-literature

Physiological characterization of an anaerobic ammonium-oxidizing bacterium belonging to the "Candidatus scalindua" group.

Project description:The phylogenetic affiliation and physiological characteristics (e.g., Ks and maximum specific growth rate [μmax]) of an anaerobic ammonium oxidation (anammox) bacterium, "Candidatus Scalindua sp.," enriched from the marine sediment of Hiroshima Bay, Japan, were investigated. "Candidatus Scalindua sp." exhibits higher affinity for nitrite and a lower growth rate and yield than the known anammox species.

| S-EPMC3697556 | biostudies-literature

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