Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lipomyces starkeyi

ABSTRACT: Transcriptome analysis of mutant yeast Lipomyces starkeyi

PROVIDER: PRJDB17838 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR541495_1.fastq.gz	Fastqsanger.gz
	DRR541495_2.fastq.gz	Fastqsanger.gz
	DRR541496_1.fastq.gz	Fastqsanger.gz
	DRR541496_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Transcriptomic analysis reveals three important carbohydrate-active enzymes contributing to starch degradation of oleaginous yeast Lipomyces starkeyi

Project description:The oleaginous yeast Lipomyces starkeyi has a high capacity for starch assimilation, but the genes involved and specific mechanisms in starch degradation remain unclear. This study aimed to identify the critical carbohydrate-active enzyme (CAZyme) genes contributing to starch degradation in L. starkeyi. Comparative transcriptome analysis of cells cultured in glucose and soluble starch medium revealed that 55 CAZymes (including transcript IDs 3772, 1803, and 7314) were highly expressed in soluble starch medium. Protein domain structure and disruption mutant analyses revealed that 3772 encodes the sole secreted α-amylase (LsAmy1p), whereas 1803 and 7314 encode secreted α-glucosidase (LsAgd1p and LsAgd2p, respectively). Triple-gene disruption exhibited severely impaired growth in soluble starch, dextrin, and raw starch media, highlighting their critical role in degrading polysaccharides composed of glucose linked by α-1,4-glucosidic bonds. This study provided insights into the complex starch degradation mechanism in L. starkeyi.

2024-12-31 | GSE276000 | GEO

Lipomyces starkeyi

Project description:Lipomyces starkeyi Genome sequencing

| PRJNA755876 | ENA

Lipomyces starkeyi

Project description:Lipomyces starkeyi Raw sequence reads

| PRJNA315084 | ENA

Lipomyces starkeyi strain:NRRL Y11557 | isolate:NRRL Y11557

Project description:Lipomyces starkeyi NRRL Y11557 transcriptome

| PRJNA372984 | ENA

Lipomyces starkeyi strain:CBS 8552 | isolate:CBS 8552

Project description:Lipomyces starkeyi CBS 8552 Transcriptome - FKP1285_RNA