Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis halleri subsp. gemmifera

ABSTRACT: Cold suppresses virus accumulation and alters the host transcriptomic response in the turnip mosaic virus - Arabidopsis halleri system

PROVIDER: PRJDB19067 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR612914.fastq.gz	Fastqsanger.gz
	DRR612915.fastq.gz	Fastqsanger.gz
	DRR612916.fastq.gz	Fastqsanger.gz
	DRR612917.fastq.gz	Fastqsanger.gz
	DRR612918.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 179

Similar Datasets

Arabidopsis halleri subsp. gemmifera

Project description:Comparative plant transcriptome profiling of Arabidopsis halleri between four combinations of turnip mosaic virus and aphid presence/absence

| PRJDB36131 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Transcriptome phenology of Arabidopsis halleri

| PRJDB5830 | ENA

A resilient mutualistic interaction between cucumber mosaic virus and its natural host Arabidopsis halleri to adapt to an environmental change

Project description:A pseudometallophyte Arabidopsis halleri is frequently found to be infected with cucumber mosaic virus (CMV) in its natural habitat. The purpose of this study is to elucidate the effect of CMV infection on its natural hosts. The CMV(Ho) strain isolated from A. halleri was inoculated into clonal A. halleri plants that were obtained from runners of mother plants, and the pathosystem consisting of CMV(Ho) and its natural host A. halleri was established.In low heavy metal environment, the CMV(Ho) infection caused growth retardation in the above-ground part (stems and leaves) of host plants, and thereby conferred strong drought tolerance on host plants. On the other hand, in high heavy metal environment, which simulates a natural habitat for A halleri, the CMV(Ho) infection did not cause any symptoms to host plants and conferred mild drought tolerance. And the result of transcriptome analysis suggests that CMV(Ho) is recognized as a symbiont rather than a pathogen by its host plant. These results indicate a resilient mutualistic interaction between CMV(Ho) and its natural host A. halleri to adapt to an environmental change.

2022-03-05 | GSE197739 | GEO

Arabidopsis halleri subsp. gemmifera

Project description:Arabidopsis halleri subsp. gemmifera Genome sequencing

| PRJNA170229 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Denovo assembly of Arabidopsis halleri subsp. gemmifera

| PRJDB4678 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Individual-based re-sequencing of Arabidopsis halleri subsp. gemmifera

| PRJDB3777 | ENA

Arabidopsis halleri subsp. gemmifera

Project description:Seasonal analysis of DNA methylation in Arabidopsis halleri subsp. gemmifera