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Unidentified

ABSTRACT: Chicken probiotics (KAP230729)

PROVIDER: PRJDB19512 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR680582.fastq.gz	Fastqsanger.gz
	DRR680583.fastq.gz	Fastqsanger.gz
	DRR680584.fastq.gz	Fastqsanger.gz
	DRR680585.fastq.gz	Fastqsanger.gz
	DRR680586.fastq.gz	Fastqsanger.gz

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RNA-Seq transcriptome analysis of ileum in Taiping chicken supplemented with the dietary probiotic and fructo-oligosaccharides

Project description:Purpose:Our data significantly advance understanding of Probiotics and Fructooligosaccharide regulatory mechanism in ileum of Taiping chicken Methods: Using RNA-seq analysis to study the gene expression in ileum tissue after Taiping chicken was given Probiotics and Fructooligosaccharide Results: A total of 164,629,826 and 149,883,266 raw reads were generated from the CT and MP_ FOS, respectively . After removing the interference data, about 164,028,872 and 149,364,852 clean reads were obtained Conclusions: through high-throughput sequencing of the six libraries from ileum of Taiping chicken, the expression level of mRNA has significant changes after given probiotics

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RNA-Seq transcriptome analysis of ileum in Taiping chicken supplemented with the dietary probiotic

Project description:Purpose:Our data significantly advance understanding of probiotic regulatory mechanism of miRNA in ileum of Taiping chicken Methods: Using RNA-seq analysis to study the gene expression in ileum tissue after Taiping chicken was given probiotics Results: A total of 164,629,826 and 156,180,764 raw reads were generated from the CT and MP, respectively. After removing the interference data, about 164,028,872 and 155,579,470 clean reads were obtained Conclusions: through high-throughput sequencing of the six libraries from ileum of Taiping chicken, the expression level of mRNA has significant changes after given probiotics

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Chicken microbiome LC - MS / MS

Project description:Bacteroidaceae are common gut microbiota members in all warm-blooded animals. However, if Bacteroidaceae are to be used as probiotics, the species selected for different hosts should reflect the natural distribution. In this study, we therefore evaluated host adaptation of bacterial species belonging to the family Bacteroidaceae. B. dorei, B. uniformis, B. xylanisolvens, B. ovatus, B. clarus, B. thetaiotaomicron and B. vulgatus represented human-adapted species while B. gallinaceum, B. caecigallinarum, B. mediterraneensis, B. caecicola, M. massiliensis, B. plebeius and B. coprocola were commonly detected in chicken but not human gut microbiota. There were 29 genes which were present in all human-adapted Bacteroides but absent from the genomes of all chicken isolates and these included genes required for the pentose cycle, and glutamate or histidine metabolism. These genes were expressed during an in vitro competitive assay, in which human-adapted Bacteroides species overgrew the chicken adapted isolates. Not a single gene specific for the chicken-adapted species was found. Instead, chicken adapted species exhibited signs of frequent horizontal gene transfer, of KUP, linA and sugE genes in particular. The differences in host adaptation should be considered when the new generation of probiotics for humans or chickens is designed.

2020-09-28 | PXD020954 | Pride

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Project description:Kimchi probiotics development and health function kimchi industrialization (KAP220318)

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Project description:Kimchi probiotics development and health function kimchi industrialization (KAP220381)

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RNA-Seq transcriptome analysis of ileum in Taiping chicken supplemented with fructooligosaccharide

Project description:Purpose: Our data significantly advance understanding of Fructooligosaccharide regulatory mechanism in ileum of Taiping chicken Methods: Using RNA-seq analysis to study the gene expression in ileum tissue after Taiping chicken was given Fructooligosaccharide Results: A total of 164,629,826 and 152,047,552 raw reads were generated from the CT and FOS, respectively . After removing the interference data, about 164,028,872 and 151,452,588 clean reads were obtained Conclusions: through high-throughput sequencing of the six libraries from ileum of Taiping chicken, the expression level of mRNA has significant changes after given probiotics

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Project description:Investigation of health functionalities of kimchi probiotics in vivo (KAP220299)

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Project description:Gene expression profiling in colon of mice treated by polyamine or probiotics (CBX171)

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Project description:Identification of Effective Mechanism of IBD Therapeutic Probiotics via Genome and Metagenomic Analysis (KAP230536)

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