Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Unclassified Poxviridae

ABSTRACT: Draft genome sequence of fish poxvirus detected from Pagrus major

PROVIDER: PRJDB19857 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR628059_1.fastq.gz	Fastqsanger.gz
	DRR628059_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Pagrus major

Project description:Pagrus major Raw sequence reads

| PRJNA605708 | ENA

Pagrus major

Project description:Pagrus major Genome sequencing

| PRJNA480768 | ENA

Pagrus major

Project description:Pagrus major genome analyses

| PRJDB5593 | ENA

Pagrus major

Project description:Pagrus major overview

| PRJNA427489 | ENA

unclassified Flavobacteriaceae

Project description:Draft genome sequence of Flavobacteriaceae isolated from sweetfish in Gifu Prefecture, Japan

| PRJDB11092 | ENA

School of Marine Sciences, Sun Yat-sen University

Project description:Dentex tumifrons and Pagrus major Assembly

| PRJNA1144796 | ENA

Transcriptional Profile of Lactobacillus helveticus grown in milk vs. MRS medium

Project description:L. helveticus is used to modulate cheese flavor and as a starter organism in certain cheese varieties. Our group has compiled a draft (4x) sequence for the 2.4 Mb genome of an industrial strain L. helveticus CNRZ32. The primary aim was to investigate expression of 168 completely sequenced genes during growth in milk and MRS medium using microarrays. Oligonucleotide probes against each of the completely sequenced genes were compiled on maskless photolithography-based DNA microarrays. Additionally, the entire draft genome sequence was used to produce tiled microarrays where the non-interrupted sequence contigs were covered by consecutive 24-mer probes. Keywords: growth conditions response

2007-02-14 | GSE7005 | GEO

CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds

Project description:Since CNVs play a vital role in genomic studies, it is an imperative need to develop a comprehensive, more accurate and higher resolution porcine CNV map with practical significance in follow-up CNV functional analyses To detect CNV of pigs, we performed high density aCGH data of diverse pig breeds in the framework of the pig draft genome sequence (Sscrofa10.2) 9 Chinese indigenous pig, 2 commercial pigs, 1 wild pig were detected using one pig of Duroc as reference.

2013-05-15 | E-GEOD-46847 | biostudies-arrayexpress

Expression profiling in Macaca fascicularis liver samples

Project description:The long-tailed macaque, also referred to as cynomolgus monkey (Macaca fascicularis), is one of the most important non-human primate animal models in basic and applied biomedical research. To improve the predictive power of primate experiments for humans, we determined the genome sequence of a Macaca fascicularis female of Mauritian origin using a whole-genome shotgun sequencing approach. We applied a template switch strategy which employs either the rhesus or the human genome to assemble sequence reads. The 6-fold sequence coverage of the draft genome sequence enabled discovery of about 2.1 million potential single-nucleotide polymorphisms based on occurrence of a dimorphic nucleotide at a given position in the genome sequence. Homology-based annotation allowed us to identify 17,387 orthologs of human protein-coding genes in the M. fascicularis draft genome and the predicted transcripts enabled the design of a M. fascicularis-specific gene expression microarray. Using liver samples from 36 individuals of different geographic origin, we identified 718 genes with highly variable expression in liver, whereas the majority of the transcriptome shows relatively stable and comparable expression. Knowledge of the M. fascicularis draft genome is an important contribution to both the use of this animal in disease models and the safety assessment of drugs and their metabolites. In particular, this information allows high-resolution genotyping and microarray-based gene expression profiling for animal stratification, thereby allowing the use of well-characterized animals for safety testing. Finally, the genome sequence presented here is a significant contribution to the global "3R" animal welfare initiative, which has the goal to reduce, refine and replace animal experiments.

2011-08-25 | GSE30184 | GEO

Intestinal microbiota of red sea bream (Pagrus major)

Project description:Intestinal microbiota of red sea bream (Pagrus major)

| PRJEB53722 | ENA