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Sorghum bicolor

ABSTRACT: Tissue specific expression data in Sorghum bicolor BTx623

OTHER RELATED OMICS DATASETS IN: E-MTAB-4273

PROVIDER: PRJDB3281 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	DRR030758.fastq.gz	Fastqsanger.gz
	DRR030759.fastq.gz	Fastqsanger.gz
	DRR030760.fastq.gz	Fastqsanger.gz
	DRR030761.fastq.gz	Fastqsanger.gz
	DRR030762.fastq.gz	Fastqsanger.gz

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Tissue specific expression data in Sorghum bicolor BTx623

Project description:This study used with RNA-Seq to examine the tissue specific expression data within sorghum plants for improving the Sorghum bicolor gene annotation. We examined the RNA from tissues (spikelet, seed and stem) in Sorghum bicolor (BTx623).Total RNAs form each tissues were extracted using SDS/phenol method followed by LiCl purification

2015-03-11 | E-MTAB-4273 | biostudies-arrayexpress

Response of Sorghum bicolor to salt stress

Project description:This study examines the proteomic responses in tissues of etiolated Sorghum bicolor BTx623 seedlings to salt stress (100 mM NaCl). The aim of the experiment is to investigate the induction and posssible role of Membrane Steroid Binding Protein 1 to salt tolerance in Sorghum.

2025-12-05 | PXD058939 | Pride

RNA-Seq and BS-Seq of Sorghum bicolor tissues

Project description:This study utilized next generation sequencing technology (RNA-Seq and BS-Seq) to examine the transcriptome and methylome of various tissues within sorghum plants with the ultimate goal of improving the Sorghum bicolor annotation We examined the mRNA of various Sorghum bicolor (BTx623) tissues (flowers, vegitative and floral meristems, embryos, roots and shoots) and bisulfite treated DNA from two root samples

2014-08-29 | E-GEOD-50464 | biostudies-arrayexpress

RNA-Seq and BS-Seq of Sorghum bicolor tissues

Project description:This experiment contains the subset of data corresponding to sorghum RNA-Seq data from experiment E-GEOD-50464 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50464/), which goal is to examine the transcriptome of various Sorghum bicolor (BTx623) tissues: flowers, vegetative and floral meristems, embryos, roots and shoots. Thus, we expanded the existing transcriptome atlas for sorghum by conducting RNA-Seq analysis on meristematic tissues, florets, and embryos, and these data sets have been used to improve on the existing community structural annotations.

2014-08-29 | E-MTAB-3839 | biostudies-arrayexpress

Variation in gene expression between two Sorghum bicolor lines differing in innate immunity response

Project description:Comparative RNA-seq analysis of MAMP triggered gene expression in two sorghum bicolor lines, BTx623 and SC155-14E, revealed a clear transcriptional response to elicitation with the microbe associated molecular pattern (MAMPs) flagellin (flg22) or chitin elicitation.

2020-06-06 | GSE151860 | GEO

RNA-Seq of Sorghum bicolor 9d seedlings in response to osmotic stress and abscisic acid

Project description:This study utilized next generation sequencing technology (RNA-Seq) to examine the transcriptome of sorghum plants challenged with osmotic stress and exogenous abscisic acid (ABA) to elucidate those genes and gene networks that contribute to sorghum's tolerance to water-limiting environments with a long-term aim of developing strategies to improve plant productivity under drought. We examined the mRNA of 9 day old Sorghum bicolor (BTx623) from 2 tissue types (roots and shoots) for 2 treatments (20 uM ABA and 20% PEG) with corresponding controls (0.2M NaOH and H2O) for 27 hrs prior to harvesting, each done in triplicate biological replicates - resulting in 24 unique runs

2011-10-26 | E-GEOD-30249 | biostudies-arrayexpress

RNA-seq of Sorghum Bicolor BTX623 inflorescence and flag leaves

Project description:Sorghum plants (Btx623 background) were grown in a glasshouse between March and May 2014. At panicle emergence, two biological replicates of flag leaf tissue and two biological replicates of emerging panicle tissue were harvested and used for RNA extraction. Btx623 is a non-shattering Sorghum accession, thus in the future we would like to add additional samples from accessions with varying degrees of seed shattering. This dataset will be useful for future comparisons of 1) shattering individuals at these stages and 2) additional flowering developmental time points in a variety of accessions (http://www.rnaseqforthenextgeneration.org/profiles/carrie-thurber.html#research)

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Sorghum bicolor and Setaria viridis PARE-seq

Project description:Parallel Analysis of RNA Ends (PARE) sequencing reads were generated to validate putative microRNAs and identify cleavage sites in Sorghum bicolor and Setaria viridis.

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RNA-Seq and BS-Seq of Sorghum bicolor tissues

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RNA-seq data for a comparative transcriptome study of Sorghum bicolor BTX623

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2018-07-31 | E-MTAB-5956 | biostudies-arrayexpress

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