Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizosphere metagenome

ABSTRACT: Rhizotypes of plant-root fungal biome

PROVIDER: PRJDB4000 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR037757.fastq.gz	Fastqsanger.gz
	DRR037758.fastq.gz	Fastqsanger.gz
	DRR037759.fastq.gz	Fastqsanger.gz
	DRR037760.fastq.gz	Fastqsanger.gz
	DRR037761.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 2013

Similar Datasets

rhizosphere metagenome

Project description:Plant root microbiome

| PRJNA247469 | ENA

The preceding root system drives the rhizosphere microbiome

Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

2020-03-06 | GSE146427 | GEO

rhizosphere metagenome

Project description:Plant root and soil microbiome

| PRJDB12937 | ENA

rhizosphere metagenome

Project description:Succession of plant root-associated bacteria during plant development

| PRJDB2621 | ENA

Herbaspirillum seropedicae transcript profile on maize rhizosphere

Project description:Herbaspirillum seropedicae is a Betaproteobacterium capable of colonizing epiphytically and endophytically commercial grasses, promoting plant growth. In this study, we utilized RNA-seq to compare the transcriptional profiles of planktonic and maize root-attached H. seropedicae SmR1.

2015-02-28 | E-MTAB-3026 | biostudies-arrayexpress

rhizosphere metagenome

Project description:Populous trichocarpa salicylates and rhizosphere micro biome

| PRJNA473652 | ENA

biofilm metagenome

Project description:Dishwasher Biome - fungal community analysis

| PRJNA317625 | ENA

A nucleoside signal generated by a fungal endophyte regulates host cell death and promotes root colonization

Project description:Regulated host cell death is part of a plant defense strategy against pathogens but it is also involved in accommodating certain beneficial root microbes. We have identified extracellular metabolites and intracellular metabolic signals that contribute to beneficial root fungal endophyte colonization, and uncovered a conserved cell death mechanism likely co-opted for establishing plant-endophyte symbiosis.

2024-11-17 | GSE209761 | GEO

Comprehensive effects of GmVP2-overexpression on plant growth, P-remobilization and rhizosphere microbial community

Project description:Increased root H+ secretion is known as a strategy of plant adaption to low phosphorus (P) stress by enhancing mobilization of sparingly soluble P-sources. However, it remains fragmentarywhether enhanced H+ exudation could reconstruct the plant rhizosphere microbial community under low P stress. The present study found that P deficiency led to enhanced H+ exudation from soybean (Glycine max) roots. Three out of all eleven soybean H+-pyrophosphatases (GmVP) geneswere up-regulated by Pi starvation in soybean roots. Among them, GmVP2 showed the highest expression level under low P conditions. Transient expression of a GmVP2-green fluorescent protein chimera in tobacco (Nicotiana tabacum) leaves, and functional characterization of GmVP2 in transgenic soybean hairy roots demonstrated that GmVP2 encoded a plasma membrane transporter that mediated H+ exudation. Meanwhile, GmVP2-overexpression in Arabidopsis thaliana resulted in enhanced root H+ exudation, promoted plant growth, and improved sparingly soluble Ca-P utilization. Overexpression of GmVP2 also changed the rhizospheric microbial community structures, as reflected by a preferential accumulation of acidobacteria in the rhizosphere soils. These results suggested that GmVP2 mediated Pi-starvation responsive H+ exudation,which is not only involved in plant growth and mobilization of sparingly soluble P-sources, but also affects microbial community structures in soils.

2023-06-01 | GSE205273 | GEO

Project description:Plant root fungal sequencing

| PRJNA1134636 | ENA