Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Activated sludge metagenome

ABSTRACT: WL Reactor published in ME

PROVIDER: PRJDB4240 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR046678.fastq.gz	Fastqsanger.gz
	DRR046679.fastq.gz	Fastqsanger.gz
	DRR046680.fastq.gz	Fastqsanger.gz
	DRR046681.fastq.gz	Fastqsanger.gz
	DRR046682.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 85

Similar Datasets

activated sludge metagenome

Project description:Impact of PCMX on aerobic reactor sludge system

| PRJNA1056539 | ENA

Activated Sludge Metagenome

Project description:Tropical Low-DO OA Reactor 16S rRNA Amplicon Sequencing

| PRJNA588111 | ENA

Census of the viral metagenome within an activated sludge microbial assemblage.

Project description:The viral metagenome within an activated sludge microbial assemblage was sampled using culture-dependent and culture-independent methods and compared to the diversity of activated sludge bacterial taxa. A total of 70 unique cultured bacterial isolates, 24 cultured bacteriophages, 829 bacterial metagenomic clones of 16S rRNA genes, and 1,161 viral metagenomic clones were subjected to a phylogenetic analysis.

| S-EPMC2849206 | biostudies-literature

activated sludge metagenome

Project description:Comammox bacteria in a weakly acidic continuous flow membrane (CFM) reactor

| PRJNA928855 | ENA

activated sludge metagenome

Project description:Stratification of microbial diversity in anaerobic baffled reactor (ABR) treating vegetable waste

| PRJNA271635 | ENA

Gene cloning and characterization of a novel esterase from activated sludge metagenome.

Project description:A metagenomic library was prepared using pCC2FOS vector containing about 3.0 Gbp of community DNA from the microbial assemblage of activated sludge. Screening of a part of the un-amplified library resulted in the finding of 1 unique lipolytic clone capable of hydrolyzing tributyrin, in which an esterase gene was identified. This esterase/lipase gene consists of 834 bp and encodes a polypeptide (designated EstAS) of 277 amino acid residuals with a molecular mass of 31 kDa. Sequence analysis indicated that it showed 33% and 31% amino acid identity to esterase/lipase from Gemmata obscuriglobus UQM 2246 (ZP_02733109) and Yarrowia lipolytica CLIB122 (XP_504639), respectively; and several conserved regions were identified, including the putative active site, HSMGG, a catalytic triad (Ser92, His125 and Asp216) and a LHYFRG conserved motif. The EstAS was overexpressed, purified and shown to hydrolyse p-nitrophenyl (NP) esters of fatty acids with short chain lengths (< or = C8). This EstAS had optimal temperature and pH at 35 degrees C and 9.0, respectively, by hydrolysis of p-NP hexanoate. It also exhibited the same level of stability over wide temperature and pH ranges and in the presence of metal ions or detergents. The high level of stability of esterase EstAS with its unique substrate specificities make itself highly useful for biotechnological applications.

| S-EPMC3224729 | biostudies-literature

activated sludge metagenome

Project description:Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor metagenome

| PRJNA571456 | ENA

activated sludge metagenome

Project description:Metageomic analysis of biofilms in traditional activated sludge treatment plants or reactor for swine wastewater

| PRJDB8118 | ENA

activated sludge metagenome

Project description:Microbial Community Responses to Cyanide Loading in A Biological Cyanide-containing Wastewater Treatment Reactor for Gold Mill Effluent

| PRJDB5810 | ENA

Non-redundant metagenome-assembled genomes of activated sludge reactors at different disturbances and scales.

Project description:Metagenome-assembled genomes (MAGs) are microbial genomes reconstructed from metagenomic data and can be assigned to known taxa or lead to uncovering novel ones. MAGs can provide insights into how microbes interact with the environment. Here, we performed genome-resolved metagenomics on sequencing data from four studies using sequencing batch reactors at microcosm (~25 mL) and mesocosm (~4 L) scales inoculated with sludge from full-scale wastewater treatment plants. These studies investigated how microbial communities in such plants respond to two environmental disturbances: the presence of toxic 3-chloroaniline and changes in organic loading rate. We report 839 non-redundant MAGs with at least 50% completeness and 10% contamination (MIMAG medium-quality criteria). From these, 399 are of putative high-quality, while sixty-seven meet the MIMAG high-quality criteria. MAGs in this catalogue represent the microbial communities in sixty-eight laboratory-scale reactors used for the disturbance experiments, and in the full-scale wastewater treatment plant which provided the source sludge. This dataset can aid meta-studies aimed at understanding the responses of microbial communities to disturbances, particularly as ecosystems confront rapid environmental changes.

| S-EPMC11316123 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data