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Dianthus caryophyllus

ABSTRACT: ddRAD-Seq to establish a genetic map in carnation

PROVIDER: PRJDB4759 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR059772_1.fastq.gz	Fastqsanger.gz
	DRR059772_2.fastq.gz	Fastqsanger.gz
	DRR059773_1.fastq.gz	Fastqsanger.gz
	DRR059773_2.fastq.gz	Fastqsanger.gz
	DRR059774_1.fastq.gz	Fastqsanger.gz

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Dianthus caryophyllus

Project description:carnation genome resequencing

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Histone H3K4 methyltransferase DcATX1 promotes ethylene induced petal senescence in carnation (Dianthus caryophyllus L.)

Project description:Petal senescence is controlled by a complex regulatory network. Epigenetic regulation like histone modification influences chromatin state and gene expression. However, involvement of histone methylation in regulating petal senescence is still largely unknown. Here, we found that the trimethylation of histone H3 at Lysine 4 (H3K4me3) is increased during the ethylene induced petal senescence in carnation (Dianthus caryophyllus L.). The H3K4me3 levels are positively associated with the expression of transcription factor DcWRKY75, ethylene biosynthetic genes DcACS1 and DcACO1, and senescence associated genes (SAGs) DcSAG12 and DcSAG29. Further, we identified that carnation DcATX1 (ARABIDOPSIS HOMOLOG OF TRITHORAX1) encodes a histone lysine methyltransferase which can methylate H3K4. Knockdown of DcATX1 delays ethylene induced petal senescence in carnation, which is associated with the downregulated expression of DcWRKY75, DcACO1 and DcSAG12. While overexpression of DcATX1 exhibits the opposite effects. DcATX1 promotes the transcription of DcWRKY75, DcACO1 and DcSAG12 by targeting to their promoters to elevate the H3K4me3 levels. Overall, our results demonstrate that DcATX1 is a H3K4 methyltransferase that promotes the expression of DcWRKY75, DcACO1, DcSAG12 and maybe other downstream target genes by regulating H3K4me3 levels, thereby accelerating ethylene induced petal senescence in carnation. This study further indicates that epigenetic regulation is important for plant senescence process.

2023-11-30 | GSE218725 | GEO

Dianthus caryophyllus

Project description:BAC sequencing data for carnation

| PRJDB2498 | ENA

Dianthus caryophyllus strain:Francesco

Project description:Carnation whole-genome sequencing

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Dianthus caryophyllus strain:Francesco

Project description:Transcriptome Analysis of Carnation (Dianthus caryophyllus L.)

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Dianthus caryophyllus strain:CLUB, ELLY, SEYCHELLS, SIBERIA

Project description:Transcriptome analysis of carnation flowers