Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gasterosteus aculeatus

ABSTRACT: WGS of Little Campbell fish for population genomics

PROVIDER: PRJDB5056 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR066575_1.fastq.gz	Fastqsanger.gz
	DRR066575_2.fastq.gz	Fastqsanger.gz
	DRR066576_1.fastq.gz	Fastqsanger.gz
	DRR066576_2.fastq.gz	Fastqsanger.gz
	DRR066577_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Gasterosteus aculeatus

Project description:WGS of Little Campbell River stream female

| PRJDB5070 | ENA

Gasterosteus aculeatus

Project description:WGS of Little Campbell River marine female

| PRJDB5057 | ENA

Marine and freshwater three-spined stickleback (Gasterosteus aculeatus) gene expression differences

2011-12-30 | GSE34783 | GEO

Gasterosteus aculeatus

Project description:PacBio Sequencing of a Little Campbell Stream male

| PRJDB7612 | ENA

Marine and freshwater three-spined stickleback (Gasterosteus aculeatus) gene expression differences

Project description:In order to identify gene expression difference between marine and freshwater stickleback populations, we compared the transcriptomes of seven adult tissues (eye, gill, heart, hypothalumus, liver, pectoral muscle, telencephalon) between a marine population sampled from the mouth of the Little Campbell river in British Columbia (LITC) and a freshwater population (Fishtrap Creek, FTC) from northern Washington. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents. Four to five fish from each population were used as biological replicates for each of the seven tissues. For each population, the sampled individuals were the lab-reared progeny of a single pair of wild-caught parents. All fish were of similar age and were raised in the same aquarium (salinity: 3.5 ppt), with a plastic divider separating the marine and freshwater groups. One male and four females were sampled from each population. Microarray experiments were performed in a 2-color format on custom Agilent arrays: experimental RNA samples were labeled with Cy5, and the common reference RNA sample was labeled with Cy3. The reference RNA was total RNA isolated from a large number of 7-day-post-hatch embryos from the freshwater population of Bear Paw Lake, Alaska (BEPA). One technical replicate was used for each array, and one of the hypothalamus samples (Hyp_FTC#3) was excluded from further analysis due to poor quality indicators. FTC#1 liver and LITC#2 pectoral muscle samples did not yield RNA of sufficient quality for the microarray experiment, and were also excluded from hybridization.

2011-12-30 | E-GEOD-34783 | biostudies-arrayexpress

Gasterosteus aculeatus

Project description:Whole genome sequencing of Little Campbell for SNP assay design

| PRJDB5055 | ENA

Gasterosteus aculeatus

Project description:WGS of Kelsey Creek threespine stickleback population

| PRJDB18694 | ENA

Gasterosteus aculeatus

Project description:Population genomics in lake and stream stickleback populations

| PRJNA237460 | ENA

Gasterosteus aculeatus aculeatus strain:Little Campbell River

Project description:RNA sequencing of brain of the F1 hybrids between marine and stream-resident threespine sticklebacks collected from Little Campbell River

| PRJDB2921 | ENA

Gasterosteus aculeatus

Project description:WGS of Japanese freshwater populations

| PRJDB5097 | ENA