Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ipomoea batatas

ABSTRACT: Sequencing of active retrotransposon Rtsp-1 insertion site in sweetpotato

PROVIDER: PRJDB5150 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR068716_1.fastq.gz	Fastqsanger.gz
	DRR068716_2.fastq.gz	Fastqsanger.gz
	DRR068717_1.fastq.gz	Fastqsanger.gz
	DRR068717_2.fastq.gz	Fastqsanger.gz
	DRR068718_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 226

Similar Datasets

Ipomoea batatas

Project description:Sequencing of retrotransposon Cl8 insertion site in sweetpotato

| PRJDB14854 | ENA

Ipomoea batatas strain:J-Red, choshu and F1 mapping population

Project description:Sequencing of active retrotransposon family (namely Cl8) insertion site in sweetpotato

| PRJDB7116 | ENA

Ipomoea batatas

Project description:Sequencing of active retrotransposon (Rtsp-1 and LIb) insertion site in sweet potato

| PRJDB1599 | ENA

High throughput sequencing identifies chilling responsive genes in sweetpotato (Ipomoea batatas Lam.) during storage

Project description:Sweetpotato (Ipomoea batatas L.) is a globally important economic food crop. It belongs to Convolvulaceae family and origins in the tropics; however, sweetpotato is sensitive to cold stress during storage. In this study, we performed transcriptome sequencing to investigate the sweetpotato response to chilling stress during storage. A total of 110,110 unigenes were generated via high-throughput sequencing. Differentially expressed genes (DEGs) analysis showed that 18,681 genes were up-regulated and 21,983 genes were down-regulated in low temperature condition. Many DEGs were related to the cell membrane system, antioxidant enzymes, carbohydrate metabolism, and hormone metabolism, which are potentially associated with sweetpotato resistance to low temperature. The existence of DEGs suggests a molecular basis for the biochemical and physiological consequences of sweetpotato in low temperature storage conditions. Our analysis will provide a new target for enhancement of sweetpotato cold stress tolerance in postharvest storage through genetic manipulation.

2024-02-06 | GSE255226 | GEO

Ipomoea batatas strain:PSL,90IDN-47 and F1 mapping population

Project description:Sequencing of active retrotransposon insertion site to construct a linkage map in sweet potato

| PRJDB2897 | ENA

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

Project description:Investigation of whole transcriptome gene expression level during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 Identification of transcription factors (TFs) during tuberous root formation and development in sweetpotato (Ipomoea batatas) cv. Guangshu 87 A total of 7 samples were analyzed using RNA isolated from sweetpotato roots at 10, 15, 20, 30, 60, 90, 120days after transplanting. Each sample had two biological replicates.

2015-07-12 | E-GEOD-48834 | biostudies-arrayexpress

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

2015-07-12 | GSE48834 | GEO

Ipomoea batatas

Project description:Sweetpotato Random survey

| PRJNA1277342 | ENA

Ipomoea batatas

Project description:Sweetpotato variety identification

| PRJDB37515 | ENA

Assessing the remarkable morphological diversity and transcriptomic basis of leaf shape in Ipomoea batatas (sweetpotato)

Project description:Leaf shape is a spectacularly diverse trait that influences various aspects of plant physiology, and is even correlated with crop yield and quality in multiple species. However, only a few genetic dissections of leaf shape have been accomplished at a species-wide level. Here, we perform an initial characterization of leaf shape variation in Ipomoea batatas, the sweetpotato, at multiple scales of analysis. We use a transcriptomic survey to identify gene expression changes associated with two commonly studied leaf shape traits--circularity and aspect ratio using 19 individuals (accession) of sweetpotato. We comprehensively describe the remarkable morphological diversity in leaf shape in sweetpotato, and identify 147 differentially regulated genes associated with circularity and aspect ratio, providing an initial set of hypotheses regarding the genetic basis of leaf shape in this species.

2019-08-31 | GSE128065 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data