Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mouse gut metagenome

ABSTRACT: 16S rDNA V1-V2 amplicon sequencing of murine colonic microbiota sampled by LMD

PROVIDER: PRJDB5162 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR142823.fastq.gz	Fastqsanger.gz
	DRR142824.fastq.gz	Fastqsanger.gz
	DRR142825.fastq.gz	Fastqsanger.gz
	DRR142826.fastq.gz	Fastqsanger.gz
	DRR142827.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

human gut metagenome

Project description:16S rRNA gene V1-V2 amplicon sequencing of healthy Japanese adults

| PRJDB9936 | ENA

human gut metagenome

Project description:16S rDNA V1-V2 amplicon sequencing of gut microbiota before and during intake of resistant starch type 2

| PRJDB11235 | ENA

mouse gut metagenome

Project description:16S rDNA V4 region amplicon sequencing of mice colonic microbiota

| PRJDB4266 | ENA

human gut metagenome

Project description:16S rRNA gene V1-V2 amplicon sequencing of patients with esophageal cancer

| PRJDB11440 | ENA

human gut metagenome

Project description:16S rDNA V1-V2 amplicon sequencing of live and total gut microbiota in various parts of the large intestine of healthy adults

| PRJDB10649 | ENA

mouse gut metagenome

Project description:16s rRNA (V1-V2) Targeted Locus (Loci) APC Min/+

| PRJNA270112 | ENA

Microbial communities in the gut of the beetle Odontotaenius disjunctus

Project description:16S amplicon pool analyses of the four gut sections of the wood-feeding beetle, Odontotaenius disjunctus The beetle is purely wood feeding, and we aim to first characterize the community that exist within the gut sections

2012-08-14 | GSE40067 | GEO

16S rDNA Amplicon Sequencing Analysis of Polystyrene Microplastic Exposed Zebrafish Intestine

Project description:Microplastics (MPs) as widespread contamination pose high risk for aquatic organisms.Intestinal microbiotahas have high interaction with immune system of host body. In this study, intestinal microbiota of zebrafish after Polystyrene (PS-MPs) exposure were characterized by 16S rDNA amplicon sequencing. We found that 100nm and 200μm PS-MPs exposure significantly increased diversity of intestinal microbiota and all the three sizes of PS-MPs increased abundance of pathogenic bacteria.

2019-10-01 | GSE136108 | GEO

Metaproteomics of colonic microbiota unveils discrete protein functions among colitic mice and control groups

Project description:We utilized the well-characterized murine T cell transfer model of colitis to find specific alterations in the intestinal luminal proteome associated with inflammation. Mass spectrometry proteomic analysis of colonic samples permitted the identification of ~10,000-12,000 unique peptides that corresponded to 5610 protein clusters identified across three groups, including the colitic Rag1 -/- T cell recipients, isogenic Rag1 -/- controls, as well as wild-type mice. Bioinformatic analyses on host and microbial proteins found specific proteins and GO term functionalities unique to each group, as well as GO terms shared across the three cohorts. We further demonstrated that the colitic mice exhibited a significant increase in Proteobacteria and Verrucomicrobia that was substantiated with 16S rDNA sequencing.

2018-07-05 | PXD006384 | Pride