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Aurantioideae

ABSTRACT: RAD-Seq of Citrus relatives

PROVIDER: PRJDB5923 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR097383.fastq.gz	Fastqsanger.gz
	DRR097384.fastq.gz	Fastqsanger.gz
	DRR097385.fastq.gz	Fastqsanger.gz
	DRR097386.fastq.gz	Fastqsanger.gz
	DRR097387.fastq.gz	Fastqsanger.gz

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Project description:Huanglongbing (HLB) is a devastating disease of citrus plants caused by the non-culturable phloem-inhabiting bacterium Candidatus Liberibacter asiaticus (CLas). Bacteria are vectored by the psyllid Diaphorina citri and introduced into sieve cells, evading plant immunity and establishing a successful infection in citrus plants. Although no resistance has been reported in Citrus species, complete or partial resistance has been documented in the distant relatives Murraya paniculate and Bergera koenigii, providing excellent systems to investigate molecular mechanisms leading to either resistance or susceptibility. The first weeks after bacterial release into the phloem are critical for the establishment of the bacteria. In this study, a thorough transcriptomic analysis of young flushes exposed to CLas-positive or negative psyllid has been performed in Citrus x sinensis, as well as in these resistant species along the first eight weeks after exposure. Our results suggest that the resistant genotypes do not deploy a classical immunity response. Instead, transcriptome changes are scarce and only a few genes are differentially expressed. Functional analysis suggest that primary metabolism and other basic cellular functions could be rewired in the resistant genotypes to limit infection. Transcriptomes of young flushes of the three species are very different, supporting the existence of distinct biochemical landscapes. These findings suggest that both intrinsic metabolic inadequacies to CLas survival, as well as inducible reprogramming of physiological functions upon CLas recognition, could orchestrate together to restrict bacteria multiplication in these resistant hosts.

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Project description:Seed abortion is one of the important reasons for the formation of seedless characters in citrus. However, the molecular mechanism of seed abortion in citrus is still unclear. We identified several genes that may play an important role in seed abortion of 'Huagan 4', such as CrWRKY74. The downstream regulatory network of CrWRKY74 was identified based on DAP seq analysis to gain insight into the molecular mechanism related to seed abortion.

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