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Solanum lycopersicum

ABSTRACT: Exome sequencing of tomato curl mutants

PROVIDER: PRJDB5932 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR097492_1.fastq.gz	Fastqsanger.gz
	DRR097492_2.fastq.gz	Fastqsanger.gz
	DRR097493_1.fastq.gz	Fastqsanger.gz
	DRR097493_2.fastq.gz	Fastqsanger.gz
	DRR097494_1.fastq.gz	Fastqsanger.gz

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Transcriptome profiling of RNAi-trasgenic Solanum lycopersicum plants resistant to Tomato yellow leaf curl virus

Project description:RNA interference (RNAi) is a widely-used approach to generate virus-resistant transgenic crops. However, durability of RNAi-mediated resistance under extreme field conditions and side-effects of stable RNAi expression have not been thoroughly investigated. Here we performed field trials and molecular characterization of two RNAi-transgenic Solanum lycopersicum lines resistant to Tomato yellow leaf curl virus (TYLCV) disease, the major constraint for tomato cultivation in Cuba and worldwide. In order to determine potential impact of the hairpin RNA transgene expression on tomato genome expression and development, differences in the phenotypes and the transcriptome profiles between the transgenic and non-transgenic plants were examined. Transcriptome profiling revealed a common set of up- and down-regulated tomato genes, which correlated with slight developmental abnormalities in both transgenic lines.

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Project description:Transcriptome data from tomato parthenocarpic mutants lacking Tomato APETALA3 (TAP3)

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Project description:Characterization and function of Tomato yellow leaf curl virus-derived small RNAs generated in the tolerant and susceptible tomato varieties using deep sequencing

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Solanum lycopersicum cultivar:Moneymaker

Project description:Changes of tomato transcriptomes upon Tomato yellow leaf curl virus infection by RNA-Seq

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Project description:Transcriptome data from tomato parthenocarpic mutants lacking SlDELLA

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Project description:Transcriptome profiling of RNAi-trasgenic Solanum lycopersicum plants resistant to Tomato yellow leaf curl virus

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Next Generation Sequencing Facilitates Quantitative Analysis of Solanum lycopersicum Flower Transcriptomes

Project description:RNA sequencing in tomato for detect mRNA expression of Solanum lycopersicum flower.The two cultivars (monomaker, raceme) had three different flowering stages (budlet, Flower bud, Full bloom) for transcriptome sequencing

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Project description:RNA-seq during adventitious rooting in tomato mars1 mutants

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Next Generation Sequencing Facilitates Quantitative Analysis of Solanum lycopersicum Axillary bud Transcriptomes

Project description:RNA sequencing in tomato for detect mRNA expression of Solanum lycopersicum Axillary bud.The two cultivars (monomaker, raceme) at Axillary bud for transcriptome sequencing

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The Solanum lycopersicum PIF8a predominantly regulate the low R/FR response in tomato

Project description:PHYTOCHROME-INTERACTING FACTORs (PIFs) regulate growth-related gene expression in response to environmental conditions. Among their diverse functions in regulating signal responses, PIFs play an important role in thermomorphogenesis (the response to increased ambient temperature) and in the shade-avoidance response. While numerous studies have examined the varied roles of PIFs in Arabidopsis (Arabidopsis Thaliana), their roles in crop plants remain poorly investigated. This study delves into the conservation of PIFs activity among species by examining their functions in tomato (Solanum lycopersicum) and comparing them to known PIF functions in Arabidopsis using single and higher-order mutants of tomato PIF genes (SlPIFs). We demonstrate that, in contrast to Arabidopsis, PIFs are not required for thermomorphogenesis-induced stem elongation in tomato. In addition, whereas Arabidopsis PIF8 has a minor effect on plant growth, tomato SlPIF8a plays a key role in the low red/far-red (R/FR) response. In contrast, SlPIF4 and SlPIF7s play minor roles in this process. We also investigated the tissue-specific low R/FR response in tomato seedlings and demonstrate that the aboveground organs exhibit a conserved response to low R/FR, which is regulated by SlPIFs. Our findings provide insights into PIF-mediated responses in crop plants, which may guide future breeding strategies to enhance yield under high planting densities.

2025-03-15 | GSE267088 | GEO

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