Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: RNA-seq of VANC transgenic plants

PROVIDER: PRJDB6099 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR099080_1.fastq.gz	Fastqsanger.gz
	DRR099080_2.fastq.gz	Fastqsanger.gz
	DRR099081_1.fastq.gz	Fastqsanger.gz
	DRR099081_2.fastq.gz	Fastqsanger.gz
	DRR099082_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Genome-wide ATAF1 binding sites in Arabidopsis thaliana

Project description:Using a transgenic line expressing HA-tagged ATAF1 uncovered >400 ChIP-seq peaks in ATAF1-HA plants compared to Col-0 wild-type plants. Only a small sub-set of the candidate peaks could be verified using ChIP-qpcr or EMSA. Among the verified peaks we uncovered the key ABA biosynthetic gene NCED3 as a target of ATAF1

2014-01-01 | GSE43637 | GEO

Arabidopsis thaliana

Project description:Whole-genome bisulfite sequencing of VANC transgenic plants

| PRJDB6098 | ENA

Arabidopsis thaliana: transgenic plants vs wild type

Project description:Transcriptional profiling of Arabidopsis thaliana 12-days old seedlings comparing Col-0 wild type with transgenic plants with altered expression of dual-targetting plastid/mitochondrial organellar RNA-polymerase RPOTmp. Transgenic plants used for experiment were: overexpressor plants obtained by transformation of Col-0 WT plants with genetic constructs created in [Tarasenko et al., 2016] contained catalytic part of RPOTmp enzyme with transit peptides of RPOTm (mitochondrial) and RPOTp (plastid) by agrobacterial transformation; plants with complementation of RPOTmp functions in mitochondria or chloroplasts obtained from transformation of GABI_286E07 rpotmp knockout-mutant plants with genetic constructs created in [Tarasenko et al., 2016]. Goal was to determine the effects of RPOTmp knockout/overexpression on global Arabidopsis thaliana gene expression.

2023-12-25 | GSE251661 | GEO

Arabidopsis thaliana

Project description:Root specific silencing-related and nitrogen-dependent small RNA profiling of Arabidopsis transgenic plants

| PRJNA276789 | ENA

Arabidopsis thaliana

Project description:ChIP-seq of WT(with 35S-SUC2 transgene) and proMBD7::gMBD7:4xMYC transgenic plants

| PRJNA253487 | ENA

Transcriptomic changes in Arabidopsis thaliana upon the expression of mutated TFIIS

Project description:The expresion of dominant negative version of Arabidopsis TFIIS (TFIISmut) in plants lacking funtional TFIIS leads to severe growth defects. The genome-wide analysis of transcriptomic changes upon TFIISmut expression was performed by RNA-seq to better understand the biological importance of TFIIS. 10DAS seedlings of transgenic lines carring inducible GFP-TFIIS or GFP-TFIISmut transgenes were studied by RNA-seq following plants exposure to 24h b-estradiol or EtOH (mock) induction.

2020-03-25 | GSE129072 | GEO

Genome-wide ATAF1 binding sites in Arabidopsis thaliana

2014-01-01 | E-GEOD-43637 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:Small RNA sequences in transgenic Arabidopsis plants expressiong a viral RNA silencing suppressor of plantago asiatica mosaic virus.

| PRJDB2183 | ENA

Arabidopsis thaliana

Project description:Differentially expressed genes between WT and AtC3H17-overexpressing transgenic plants

| PRJNA305103 | ENA

Arabidopsis thaliana

Project description:Transgenic Ah24-OE vs Wild type Col 0 Arabidopsis plants

| PRJNA288139 | ENA