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Arabidopsis thaliana strain:Col

ABSTRACT: The Jumonji-C domain-containing proteins JUMONJI 30 and JUMONJI 32 control abscisic acid-dependent growth arrest during Arabidopsis post-germination.

PROVIDER: PRJDB7207 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR142800.fastq.gz	Fastqsanger.gz
	DRR142801.fastq.gz	Fastqsanger.gz
	DRR142802.fastq.gz	Fastqsanger.gz
	DRR142803.fastq.gz	Fastqsanger.gz
	DRR142804.fastq.gz	Fastqsanger.gz

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Arabidopsis thaliana

Project description:The Jumonji-C domain-containing proteins JUMONJI 30 and JUMONJI 32 control abscisic acid-dependent growth arrest during Arabidopsis post-germination.

| PRJDB7959 | ENA

Global gene expression profiling of Jmjd6- and Jmjd4-depleted mouse NIH3T3 fibroblasts

Project description:Emerging evidence suggests Jumonji domain-containing proteins are epigenetic regulators in diverse biological processes including cellular differentiation and proliferation. RNA interference-based analyses combined with gene expression profiling can effectively characterize the cellular functions of these enzymes. We found that the depletion of Jumonji domain-containing protein 6 (Jmjd6) and its paralog protein Jumonji domain-containing protein 4 (Jmjd4) individually by small hairpin RNAs (shRNAs) slowed cell proliferation of mouse NIH3T3 fibroblasts. We subsequently performed gene expression profiling on both Jmjd6- and Jmjd4-depleted mouse NIH3T3 fibroblasts using the Affymetrix GeneChip Mouse Exon 1.0 ST Array.

2016-01-12 | GSE76758 | GEO

Genome-wide comparison of H3K27me3 difference between ref6-1 and wild type Col

Project description:We demonstrate that REF6/JMJ12 (RELATIVE OF EARLY FLOWERING 6/Jumonji domain-containing protein 12) could demethylate H3K27me3. Loss of REF6/JMJ12 leads to ectopic and increased H3K27me3 of a large spectrum of genes involved in development and responses to stimuli.

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Global gene expression profiling of Jmjd6- and Jmjd4-depleted mouse NIH3T3 fibroblasts

2016-01-12 | E-GEOD-76758 | biostudies-arrayexpress

Genome-wide comparison of H3K27me3 difference between ref6-1 and wild type Col

2011-05-25 | E-GEOD-25446 | biostudies-arrayexpress

Jumonji C domain-containing protein 12 is a Histone H3 Lysine 27 Demethylase

Project description:Jumonji C domain-containing protein 12 is a Histone H3 Lysine 27 Demethylase

| PRJNA133807 | ENA

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIRP-seq]

Project description:Arabidopsis noncoding RNA HID1 acts as a positive regulator to promote phyB-mediated seed germination by modulating the biosynthesis of abscisic acid.

2024-05-05 | GSE195747 | GEO

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [RNA-seq]

Project description:Arabidopsis noncoding RNA HID1 acts as a positive regulator to promote phyB-mediated seed germination by modulating the biosynthesis of abscisic acid.

2024-05-04 | GSE195745 | GEO

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIP-seq]

Project description:Arabidopsis noncoding RNA HID1 acts as a positive regulator to promote phyB-mediated seed germination by modulating the biosynthesis of abscisic acid.

2024-05-05 | GSE195746 | GEO

The conserved splicing factor PRP21 regulates abscisic acid response and seed germination in Arabidopsis [RNA-Seq]

Project description:Seed germination is a critical developmental stage in the life cycle of plants, and its regulation is essential for ensuring crop productivity, particularly under adverse environmental conditions. Here, we find that the Arabidopsis thaliana PRE-MRNA-PROCESSING (PRP21) is crucial for the regulation of abscisic acid (ABA) response of seed germination. Our RNA deep sequencing and poly(A) tag sequencing analyses reveal that PRP21 is involved in pre-mRNA splicing, genome-wide gene transcription, and mRNA 3' end processing, highlighting its multifunctional role in gene regulation. Furthermore, we find that PRP21 interacts with various splicing factors and small nuclear ribonucleoproteins, suggesting its involvement in spliceosome assembly. Additionally, we demonstrate that PRP21 negatively regulates the expression of ABA-responsive genes, such as ABSCISIC ACID-INSENSITIVE 3 (ABI3), ABSCISIC ACID-INSENSITIVE 5 (ABI5), EARLY METHIONINE-LABELED 1 (EM1), and EARLY METHIONINE-LABELED 6 (EM6), thereby modulating ABA response and seed germination. Our findings underscore the importance of PRP21 in coordinating transcriptional and post-transcriptional processes, and provide insights into the molecular mechanisms underlying seed germination, potentially guiding crop improvement for stress tolerance.

2025-04-21 | GSE278189 | GEO

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