Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aquatic metagenome

ABSTRACT: MiFish metabarcoding Japanese Archipelago eDNA 2017

PROVIDER: PRJDB7533 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR154182_1.fastq.gz	Fastqsanger.gz
	DRR154182_2.fastq.gz	Fastqsanger.gz
	DRR154183_1.fastq.gz	Fastqsanger.gz
	DRR154183_2.fastq.gz	Fastqsanger.gz
	DRR154184_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1056

Similar Datasets

aquatic metagenome

Project description:MiFish metabarcoding

| PRJNA315750 | ENA

seawater metagenome

Project description:MiFish eDNA metabarcoding

| PRJDB9158 | ENA

seawater metagenome

Project description:MiFish eDNA metabarcoding

| PRJDB11136 | ENA

seawater metagenome

Project description:MiFish eDNA metabarcoding of deep-sea water

| PRJDB13328 | ENA

riverine and estuarine metagenome

Project description:water eDNA Mifish Metabarcoding: An extraction comparison Metagenome

| PRJNA1100780 | ENA

Towards functional profiling for eDNA based monitoring in coastal environments: a comparison of three approaches

Project description:Monitoring microbial communities can aid in understanding the state of these habitats. Environmental DNA (eDNA) techniques provide efficient and comprehensive monitoring by capturing broader diversity. Besides structural profiling, eDNA methods allow the study of functional profiles, encompassing the genes within the microbial community. In this study, three methodologies were compared for functional profiling of microbial communities in estuarine and coastal sites in the Bay of Biscay. The methodologies included inference from 16S metabarcoding data using Tax4Fun, GeoChip microarrays, and shotgun metagenomics.

2024-04-14 | E-MTAB-13075 | biostudies-arrayexpress

riverine metagenome

Project description:eDNA metabarcoding of macroinvertebrate in Japanese rivers

| PRJDB8220 | ENA

eDNA anylsis using Nanopore sequencing of fish in the Sylt Outer Reef

Project description:eDNA analysis using metabarcoding 12S Mifish on nanopore

| PRJEB75420 | ENA

Sediment and Water eDNA metabarcoding: WH429 research cruise North Sea

Project description:eDNA metabarcoding using Mifish primers at the North Sea

| PRJEB86796 | ENA

Proteomic data: The Japanese Archipelago sheltered cave lions, not tigers, during the Late Pleistocene

Project description:Lions and tigers, as dominant apex predators, likely became competitors when lions expanded from Africa into Eurasia approximately one million years ago (Ma), forming a lion–tiger transition belt from the Middle East through Central Asia to the Russian Far East. At the easternmost edge of this zone, the Japanese Archipelago has long been considered a Late Pleistocene tiger refugium, supported by large felid subfossils traditionally attributed to tigers (Panthera tigris), though their taxonomic identity remained unresolved. To clarify the origin, evolutionary history, and biogeography of Japan’s Pleistocene felids, we analyzed 26 ancient specimens previously assumed to be tigers. Using mitochondrial and nuclear genome hybridization capture and sequencing, paleoproteomics, Bayesian molecular dating, and radiocarbon dating, we found that all ancient Japanese “tiger” remains yielding molecular data were, unexpectedly, cave lions (Panthera spelaea). One specimen was radiocarbon dated to 31,060 ± 190 BP. These cave lions likely dispersed to the Japanese Archipelago between ~72.7 and 37.5 thousand years ago (ka), when a land bridge connected northern Japan to the mainland during the Last Glacial Period. Our findings challenge the long-held view that tigers once took refuge in Japan, showing instead that cave lions were widespread in northeast Asia during this period and were the Panthera lineage that colonized Japan, reaching even its southwestern regions despite habitats previously thought to favor tigers.

2026-01-26 | PXD065297 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data