Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metagenome

ABSTRACT: Arbuscular mycorrhizal fungal community of Japanese forests

PROVIDER: PRJDB8935 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR197942.fastq.gz	Fastqsanger.gz
	DRR197943.fastq.gz	Fastqsanger.gz
	DRR197944.fastq.gz	Fastqsanger.gz
	DRR197945.fastq.gz	Fastqsanger.gz
	DRR197946.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 77

Similar Datasets

soil metagenome

Project description:arbuscular mycorrhizal fungal community diversity

| PRJNA418891 | ENA

Gene expression during early stages of arbuscular mycorrhizal root formation in Medicago truncatula.

2012-03-28 | GSE34617 | GEO

Project description:arbuscular mycorrhizal fungal community diversity

| PRJNA790751 | ENA

Small RNA sequencing in tomato roots with and without Rhizophagus irregularis

Project description:Arbuscular mycorrhizal symbiosis is a predominant relationship between plant and arbuscular mycorrhizal fungi. To idendify arbuscular mycorrhiza responsive miRNAs, small RNA libraries were constructed in tomato roots colonized with Rhizophagus irregularis and without Rhizophagus irregularis. We identify miRNAs in tomato roots and provide a new profile of tomato miRNAs. And we found that some miRNAs were responsive to arbuscular mycorrhiza by comparing miRNAs in treatment with that in control.

2016-07-20 | GSE76204 | GEO

fungus metagenome

Project description:Contrasting arbuscular mycorrhizal fungal community between two Rhizophoraceae mangroves

| PRJDB10523 | ENA

Gene expression during early stages of arbuscular mycorrhizal root formation in Medicago truncatula.

Project description:Arbuscular mycorrhiza (AM) interactions between plants and Glomeromycota fungi primarily support phosphate aquisition of most terrestrial plant species. To unravel gene expression during early stages of Medicago truncatula root colonization by AM fungi, we used genome-wide transcriptome profiling based on mycorrhizal root fragments enriched for early fungal infection stages. We used Medicago GeneChips to detail the global programme of gene expression in response to early stages of colonization by arbuscular mycorrhizal fungi and identified genes differentially expressed during these early stages. Medicago truncatula GFP-HDEL hairy roots (genotypes A17 and DMI3) were grown in vertically-oriented petri dishes, incubated at 26M-BM-0C and inoculated with 8 Gigaspora margarita spores, which were positioned between the lateral roots. G.margarita spores germinated in 2 to 4 days. Hyphopodia were observed after 5-6 days. Root fragments which reacted to the fungal contact were collected and frozen. Non-inoculated control root fragments were harvested at a comparable age.

2012-03-27 | E-GEOD-34617 | biostudies-arrayexpress

AMF

Project description:Arbuscular mycorrhizal fungal community Raw sequence reads

| PRJNA427445 | ENA

Gene expression response in roots of Medicago truncatula mutants treated with Myc LCOs

Project description:Legumes interact with soil fungi, leading to the development of arbuscular mycorrhizal (AM) roots. Diffusible AM fungal signals were identified as sulphated and non-sulphated LCOs (sMyc-LCOs and nsMyc-LCOs). Applying Myc-LCOs on roots of symbiotic mutants, we used GeneChips to detail the global programme of gene expression in these mutants in response to the external application of Myc-LCOs.

2012-05-31 | GSE33637 | GEO

Small RNA sequencing in tomato roots with and without Rhizophagus irregularis

2016-07-20 | E-GEOD-76204 | biostudies-arrayexpress

Gene expression response in roots of Medicago truncatula mutants treated with Myc-LCOs

2015-11-12 | GSE67166 | GEO