Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Physcomitrium patens

ABSTRACT: Identification of the R-loop regions in the moss Physcomittella patens

PROVIDER: PRJDB9556 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR218227_1.fastq.gz	Fastqsanger.gz
	DRR218227_2.fastq.gz	Fastqsanger.gz
	DRR218228_1.fastq.gz	Fastqsanger.gz
	DRR218228_2.fastq.gz	Fastqsanger.gz
	DRR218229_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Small RNAs from the moss Physcomitrella patens

Project description:High-throughput sequencing of endogenous small RNAs from the moss Physcomitrella patens. This dataset encompasses microRNAs and other small RNAs of ~20-24 nucleotides expressed in the moss P. patens. SAMPLES UPDATED JULY 9, 2007 TO INCLUDE DATA ON SEQUENCED SMALL RNAS THAT DO NOT MATCH THE P. PATENS GENOME Keywords: High throughput small RNA sequencing

2006-08-15 | GSE5103 | GEO

Physcomitrium patens

Project description:Small RNAs from the moss Physcomitrella patens

| PRJNA95361 | ENA

Physcomitrium patens

Project description:heat-priming of the moss Physcomitrella patens during 30min

| PRJNA666761 | ENA

Physcomitrium patens

Project description:The DNA damage response transcriptome of the moss Physcomitrella patens

| PRJNA134901 | ENA

Quantitative proteomic dataset of the moss Physcomitrium patens SMG1 KO mutant line

Project description:Here, we provide an isobaric tag for relative and absolute quantitation (iTRAQ)-based quantitative proteomic dataset of the moss Physcomitrium patens smg1 knockout line. The kinase SMG1 is one of the key components of the NMD system in many organisms, including plants. Several lines with a deleted SMG1 in a land Physcomitrium patens subsp. patens (“Gransden 2004”, Frieburg) were produced by James P. B. Lloyd [doi.org/10.1111/tpj.12329]. One of these lines, SMG1 KO mutant line 2, was used for this study. Protonemata of WT and mutant lines were grown in200 ml liquid BCD medium supplemented with 5 mM ammonium tartrate (BCDAT) during a 16-h photoperiod at 250C for 8 days [https://doi.org/10.1101/pdb.prot5136]. All experiments were performed in three biological replicates.

2021-11-02 | PXD029205 | Pride

Physcomitrium patens

Project description:Changes of histone modification induced by STEMIN1 in the moss Physcomitrella patens

| PRJDB7369 | ENA

Physcomitrium patens

Project description:Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens

| PRJNA146495 | ENA

The Physcomitrium patens egg cell changes the epigenetic program and utilizes homologs of Arabidopsis male genes, including BONOBOs, for cell specification

Project description:We used single cell laser-assisted microdissection (LAM) to perform egg cell transcriptome analysis for comparison with available expression profiles of vegetative tissues and male reproductive organs. We observed an overlap in gene activity between bryophyte and angiosperm egg cells, but also clear differences. Strikingly, several processes that are male germline-specific in Arabidopsis are active in the P. patens egg cell. Among those were the moss PbBNB genes and using reporter lines and knock-out mutants we could show that they control proliferation and identity of both female and male germlines.

2021-12-16 | GSE182112 | GEO

Transcription profiling of Physcomitrella patens Reute strain

Project description:Transcription profiling of Physcomitrella patens Reute strain gametophore, mature sporophyte and spore stage. These samples are part of an large-scale expression data set for the model moss Physcomitrella patens.

2014-04-15 | E-MTAB-916 | biostudies-arrayexpress

Dynamics of the transcriptome response to heat in the moss, Physcomitrella Patens

Project description:The moss Physcomitrella patens was employed to study abiotic stress responses in order to understand the effects of mild (30°C) and strong (37°C) continuous heat stresses from 1h to 24h at a transcriptomic level.

2020-04-17 | GSE138467 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data