Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Two-component signal transduction system-freeEscherichia coli

PROVIDER: PRJDB9625 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR316917.fastq.gz	Fastqsanger.gz
	DRR316918.fastq.gz	Fastqsanger.gz
	DRR316919.fastq.gz	Fastqsanger.gz
	DRR321363.fastq.gz	Fastqsanger.gz
	DRR321364.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Streptococcus pneumoniae

Project description:Investigation of pneumococcal two-component signal transduction system RR/HK06 in D39

| PRJNA96331 | ENA

Streptococcus pneumoniae

Project description:Investigation of pneumococcal two-component signal transduction system RR/HK06 in TIGR4

| PRJNA96343 | ENA

Expression of genes at the 45 min time point relative to that at 0 min time after release from initiation-arrest in either presence or absence of TorR

Project description:We find that the response regulator TorR protein of the TorR/TorS two-component signal transduction system localizes to the old poles of the Escherichia coli cells, forming a functional focus. Interestingly, TorR co-localizes with the nucleoid in a cell-cycle-dependent mode, implying a cell-cycle-dependent interaction of TorR with its target genes.

2015-09-01 | GSE72525 | GEO

Two-component signal transduction systems in Streptomyces and related organisms

Project description:Two-component signal transduction systems in Streptomyces and related organisms

| PRJNA110647 | ENA

To compare the transcriptome of ompR null strains with wild-type strain of E. coli during acid or osmotic stress

Project description:In bacteria, one paradigm for signal transduction is the two-component regulatory system, consisting of a sensor kinase (usually a membrane protein) and a response regulator (usually a membrane protein) and a response regulator (usually a DNA binding protein). The EnvZ/OmpR two-component system in E. coli responds to osmotic stress and regulates expression of outer membrane proteins. Furthermore, bacteria were believed to regulate pH by acidifying after external acid stress, then immediately recovering. Using a pH-sensor in single living cells, we show that E. coli maintain an acidic cytoplasm. The osmotic stress transcription factor OmpR, was required. Thus, we set out to identify the OmpR targets under acid and osmotic stress.

2017-11-08 | GSE106628 | GEO

Refutation: Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus.

Project description:Refutation: Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus.

| PRJEB14381 | ENA

Comparison of the transcriptomes of a Burkholeria pseudomallei bprR [bpss0688] mutant, a bprS [bpss0687] mutant and a bprRS double mutant with the wild-type B. pseudomallei K96243 parent strain.

Project description:Objectives: The Burkholderia pseudomallei bprR and bprS genes are predicted to encode the response regulator and sensor kinase components respectively of a two component signal transduction system. Inactivation of either single component of this two component signal transduction system led to attenuation of B. pseudomallei virulence and also reduced motility. However, inactivation of both components resulted in wild-tpe virulence and motility. Therefore, we used RNA-seq to compare the transcritptomes of the three mutant strains (bprR single, bprS single, bprRS double mutant) with the wild-type parent strain in order to identify the genes differenty regulated in the different mutants.

2016-04-27 | GSE77970 | GEO

RNA-Seq-mediated transcriptome analysis of Staphylococcus aureus Newman wild-type, walKD119A, walKV149A and DHBP-treated wild-type strains

Project description:We reported the RNA-Seq results of Staphylococcus aureus Newman wild-type, walKD119A, walKV149A and DHBP-treated wild-type strains. We found that mutations of the potential signal transduction residues of WalK attenuate the activity of walKR two-component system, whereas DHBP supplementation activates this two-component system.

2016-01-15 | GSE75731 | GEO

Bifidobacterium breve UCC2003

Project description:A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003

| PRJNA151101 | ENA

Project description:Study on function and regulatory mechanism of a two-component signal transduction system cgtRS5 from Corynebacterium glutamicum

| PRJNA1246978 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data