Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system

ABSTRACT: Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge

PROVIDER: PRJEB10564 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR995410.fastq.gz	Fastqsanger.gz
	ERR995411.fastq.gz	Fastqsanger.gz
	ERR995412.fastq.gz	Fastqsanger.gz
	ERR995413.fastq.gz	Fastqsanger.gz
	ERR995414.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Metaproteome analysis of hydrothermal vent chimney biofilms

Project description:At hydrothermal vent sites, chimneys consisting of sulfides, sulfates, and oxides are formed upon contact of reduced hydrothermal fluids with oxygenated seawater. The walls and surfaces of these chimneys are an important habitat for vent-associated microorganisms. We used community proteogenomics to investigate and compare the composition and in situ protein expression of microbial communities colonizing two actively venting hydrothermal chimneys from the Manus Basin back-arc spreading center (Papua New Guinea).

2018-04-27 | PXD009105 | Pride

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 356-308 metagenome

| PRJNA469239 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 354-166 metagenome

| PRJNA469237 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 356-284 metagenome

| PRJNA502671 | ENA

hydrothermal vent metagenome

Project description:Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR)

| PRJNA274359 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 355-202 metagenome

| PRJNA469238 | ENA

Co-expression analysis reveals distinct alliances around two carbon fixation pathways in hydrothermal vent symbionts

Project description:Biological carbon fixation is foundational to the biosphere. Most autotrophs are thought to possess one carbon fixation pathway. The hydrothermal vent tubeworm Riftia pachyptila’s chemoautotrophic symbionts, however, possess two functional pathways: the Calvin Benson-Bassham (CBB) and the reductive tricarboxylic acid (rTCA) cycles. Little is known about how Riftia’s symbionts and related organisms coordinate the functioning of these two pathways. Here we investigated net carbon fixation rates, transcriptional/metabolic responses, and transcriptional co-expression patterns of Riftia pachyptila’s endosymbionts by incubating tubeworms at environmental pressures, temperature, and geochemistry. Results showed that rTCA and CBB transcriptional patterns varied in response to different geochemical regimes and that each pathway is allied to specific metabolic processes, suggesting distinctive yet complementary roles in metabolic function. Net carbon fixation rates were also exemplary, and accordingly we propose that co-activity of CBB and rTCA may be an adaptation for maintaining high carbon fixation rates, conferring a fitness advantage in dynamic vent environments.

2024-03-28 | GSE249345 | GEO

hydrothermal vent metagenome

Project description:Hydrothermal vent fields at East Scotia Ridge, Antarctica

| PRJNA237774 | ENA

hydrothermal vent metagenome

Project description:Mid-Cayman Rise deep-sea hydrothermal vent metagenomic assembly

| PRJNA765337 | ENA

Genomics insights into high pressure adaptation in a Thermococcus sp. from the world’s deepest hydrothermal vents

Project description:The present study describes the isolation of a Thermococcus sp. strain 175 from the world‘s deepest hydrothermal vent sites known thus far – The Mid-Cayman Rise.consisting of two hydrothermal venting systems Bee Bee (or Piccard), at 4950m depth and Von Damm (or Walsh) at 2300m The strain is capable of growth over 0.1MPa (atm. Pressure) to 120MPa, the widest known range of pressure dependent growth. The study further explores piezophilic adaptation using comparative genomic tools. Insights into the transcriptome of this strain providers the first look into the transcriptional machinery of peizophilic Thermococci.

2017-08-22 | GSE70228 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data