Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Landsort Deep 16S rDNA amplicon sequencing

ABSTRACT: Accumulation of DNA in an anoxic sediment – protein synthesis potential of the microbial community from Landsort Deep, the Baltic Sea (16S rDNA data)

PROVIDER: PRJEB13658 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1368630_1.fastq.gz	Fastqsanger.gz
	ERR1368630_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

16S rDNA Amplicon Sequencing Analysis of Polystyrene Microplastic Exposed Zebrafish Intestine

Project description:Microplastics (MPs) as widespread contamination pose high risk for aquatic organisms.Intestinal microbiotahas have high interaction with immune system of host body. In this study, intestinal microbiota of zebrafish after Polystyrene (PS-MPs) exposure were characterized by 16S rDNA amplicon sequencing. We found that 100nm and 200μm PS-MPs exposure significantly increased diversity of intestinal microbiota and all the three sizes of PS-MPs increased abundance of pathogenic bacteria.

2019-10-01 | GSE136108 | GEO

16s rDNA amplicon of rock samples

Project description:16s rDNA amplicon of rock samples Raw sequence reads

| PRJNA489321 | ENA

16S rDNA amplicon of Bacteria and Archaea

Project description:16S rDNA amplicon of Bacteria and Archaea Metagenome

| PRJNA411998 | ENA

soil 16s rDNA

Project description:soil 16s rDNA Metagenome

| PRJNA756830 | ENA

Prokaryotic 16s rDNA

Project description:CMRS 16s rDNA sequence

| PRJNA1313272 | ENA

16S rDNA sequencing

Project description:16S rDNA sequencing Raw sequence reads

| PRJNA882208 | ENA

16S rDNA amplicon of grass carp hindgut microbiota

Project description:16S rDNA amplicon of grass carp hindgut microbiota Raw sequence reads

| PRJNA453108 | ENA

NEREA 16S rDNA

Project description:16S rDNA amplicon sequencing of NEREA size-fractionated samples

| PRJEB74641 | ENA

Comparing 16S rDNA amplicon sequencing and hybridization capture for pea aphid microbiota diversity analysis.

Project description:ObjectiveTargeted sequencing of 16S rDNA amplicons is routinely used for microbial community profiling but this method suffers several limitations such as bias affinity of universal primers and short read size. Gene capture by hybridization represents a promising alternative. Here we used a metagenomic extract from the pea aphid Acyrthosiphon pisum to compare the performances of two widely used PCR primer pairs with DNA capture, based on solution hybrid selection.ResultsAll methods produced an exhaustive description of the 8 bacterial taxa known to be present in this sample. In addition, the methods yielded similar quantitative results, with the number of reads strongly correlating with quantitative PCR controls. Both methods can thus be considered as qualitatively and quantitatively robust on such a sample with low microbial complexity.

| S-EPMC6042230 | biostudies-literature

16S rDNA sequencing-WANZHENG

Project description:16S rDNA sequencing-WANZHENG Raw sequence reads

| PRJNA882562 | ENA