Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fraxinus excelsior and F. mandshurica transcriptional response to Hymenoscyphus fraxineus

ABSTRACT: Fraxinus excelsior and Fraxinus mandshurica transcriptional response to infection by Hymenoscyphus fraxineus

PROVIDER: PRJEB14977 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1712370_1.fastq.gz	Fastqsanger.gz
	ERR1712370_2.fastq.gz	Fastqsanger.gz
	ERR1712380_1.fastq.gz	Fastqsanger.gz
	ERR1712380_2.fastq.gz	Fastqsanger.gz
	ERR1712390_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 108

Similar Datasets

Methylation Fraxinus excelsior 2451S ONT genome

Project description:A new genome of Fraxinus excelsior was assembled using a hybrid approach combining Nanopore and Illumina data (BioProject PRJNA865134, SAMN30100368, genome JANJPF000000000 ). Methylation was also assessed in the genome. Manuscript title: Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback, G3:Genes|Genomes|Genetics

2025-03-03 | GSE214553 | GEO

Fraxinus excelsior transcriptome and methylome

Project description:This SuperSeries is composed of the SubSeries listed below. Manuscript title: Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback, G3:Genes|Genomes|Genetics

2025-03-03 | GSE214554 | GEO

Hymenoscyphus fraxineus

Project description:Hymenoscyphus fraxineus overview

| PRJNA260320 | ENA

Hymenoscyphus fraxineus

Project description:Hymenoscyphus fraxineus Transcriptome or Gene expression

| PRJNA1011055 | ENA

Fraxinus mandshurica

Project description:Fraxinus mandshurica overview

| PRJNA532251 | ENA

Hymenoscyphus fraxineus genome assembly

Project description:Hymenoscyphus fraxineus genome assembly

| PRJEB21027 | ENA

Metabolomic profiling of Fraxinus excelsior genotypes tolerant or susceptible to ash dieback disease reveals changes in iridoid glycosides

Project description:European common ash, Fraxinus excelsior L., is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus we performed untargeted metabolomic profiling on leaves from selected F. excelsior individuals showing strong tolerance or susceptibility to H. fraxineus. We identified sets of "features" [small molecules] that enabled strong discrimination between tolerant or susceptible genotypes of F. excelsior. Strikingly, tolerant F. excelsior lines exhibited low levels of iridoid glycosides, known anti-feeding deterrents. As Europe is threatened by Emerald Ash Borer (Agrilus planipennis), an invasive wood boring beetle native to East Asia that has devastated North American ash, our study raises the question whether selection for resistance to H. fraxineus leads to ecological trade-offs that result in susceptibility to emerging pests such as emerald ash borer.

2016-11-09 | MTBLS372 | MetaboLights

Fraxinus excelsior

Project description:Fraxinus excelsior Raw sequence reads

| PRJNA1024896 | ENA

Fraxinus excelsior

Project description:Fraxinus excelsior Raw sequence reads

| PRJNA1158680 | ENA

Fraxinus mandshurica

Project description:Fraxinus mandshurica Genome sequencing and assembly

| PRJNA358282 | ENA