Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chromatin states in the Arabidopsis seedlings

ABSTRACT: Chromatin states in the Arabidopsis seedlings

PROVIDER: PRJEB15549 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1662980.fastq.gz	Fastqsanger.gz
	ERR1662981.fastq.gz	Fastqsanger.gz
	ERR1662982.fastq.gz	Fastqsanger.gz
	ERR1662977.fastq.gz	Fastqsanger.gz
	ERR1662978.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Chromatin states in the Arabidopsis seedlings

Project description:We investigated the chromatin modifications H3K4me3 and H3K27me3 in the A. thaliana seedlings. Samples were collected in two biological replications.

2017-05-21 | E-MTAB-4680 | biostudies-arrayexpress

lipidomics analysis of Arabidopsis seedlings

Project description:Data include the lipidomic profiling of 5 DAG Arabidopsis seedlings from wild type and mips1 mips3 from untargeted lipidomic analysis using four biological replicates per genotype, and the absolute quantification of PI, PIP species, and PIP2 species in 5 DAG Arabidopsis seedlings from wild type and mips1 mips3.

2025-06-12 | MSV000098180 | MassIVE

Arabidopsis thaliana:cyanamid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cyanamid, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings

2013-03-01 | GSE44750 | GEO

Arabidopsis thaliana:goniothalamin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with goniothalamin, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings.

2013-03-27 | GSE44749 | GEO

Arabidopsis thaliana: safranal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with safranal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings.

2016-01-13 | GSE76787 | GEO

Arabidopsis thaliana: auxin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with auxin (indole-3-acetic acid), highlighting to the physiological function of auxin by observing early response of gene expressions in Arabidopsis seedlings.

2012-05-10 | GSE37899 | GEO

GNPS - lipidomics analysis of Arabidopsis seedlings

2025-06-12 | MSV000098180 | GNPS

Arabidopsis mitochondrial redox proteomes in different metabolic states

Project description:Intact mitochondria purified from Arabidopsis thaliana Col-0 seedlings were differentially labeled with iodoTMTs in the presence of different metabolic substrates. Redox proteomes were analyzed in a substrate depleted state and after addition of citrate and 2-oxoglutarate, providing the oxidation states of individual Cys-peptides.

2020-06-19 | PXD014302 | JPOST Repository

Arabidopsis thaliana: trans-2-hexenal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with trans-2-hexenal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings.

2013-03-01 | GSE44751 | GEO

Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for histone H2A variants and histone modifications in WT Col-0 seedlings.

Project description:How histone intrinsic sequence variation or regulatory modifications regulate nucleosome interactions with transcription remain unclear. To clarify this question, we examined how histone variants and histone modifications assemble in the Arabidopsis thaliana genome, identifying a limited number of chromatin states that divide euchromatin and heterochromatin in biologically significant subdomains. We showed that histone variants were as significant as histone modifications to determine the composition of chromatin states. The loss of function of the chromatin remodeler DECREASED IN DNA METHYLATION (DDM1) prevented the exchange between the histone variants H2A.Z and H2A.W over transposons resulting in their enrichment in chromatin states found only on proteins coding genes in the wild type. Hence, the dynamics of histone H2A variants exchange impacted the definition and distribution of chromatin states. We propose that dynamics of histone variants control the organization of histone modifications into chromatin states to achieve landmarks that signify the ability for transcription. Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for histone H2A variants and histone modifications in seedlings .

2023-05-09 | GSE226469 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data