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Expression profiling of the moss F. hygrometrica

ABSTRACT: Expression profiling of the moss F. hygrometrica

PROVIDER: PRJEB1930 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR272419.fastq.gz	Fastqsanger.gz
	ERR272420.fastq.gz	Fastqsanger.gz
	ERR272421.fastq.gz	Fastqsanger.gz
	ERR272422.fastq.gz	Fastqsanger.gz
	ERR272423.fastq.gz	Fastqsanger.gz

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Funaria hygrometrica

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Expression profiling of the moss F. hygrometrica

Project description:We experimentally generated a genome-wide gene expression data. To this end, we first collected samples of three important haploid developmental stages, specifically germinating spores (gametophyte_1), protonemata (gametophyte_2) and young gametophores (gametophyte_3) (four biological replicates each). We also collected three developmental stages of the diploid phase (sporophyte), specifically sporophytes shorter than 5mm (sporophyte_1), elongated needle-like sporophytes (sporophyte_2), and sporophytes with swollen capsules (sporophyte_3)

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Project description:The goal of this study is to identify genes whose expression is affected by decapitation and auxin in moss gametophores Project ngs2017_09_moss1-auxin in CATdb What genes are misregulated in response to decapitation or auxin response?

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Project description:Transcriptional profiling of resurrection plant Boea hygrometrica comparing control untreated plants with plants treated with dehydration. Goal was to determine the different effects of desiccation with different rates, and drought acclimation on global gene expression in Boea hygrometrica . 8 conditions comparison: untreated plants vs. plants treated with rapid dehydration for 2h (RWC~80%) and 48h (RWC<10%), untreated plants vs.plants treated with slow dehydration for 5d (RWC~80%) and 14d (RWC<10%), untreated plants vs. drought acclimated plants treated with rapid dehydration for 2h (RWC~80%) and 48h (RWC<10%). Biological replicates: 3 control replicates, 3 treated replicates.

2013-12-07 | E-GEOD-53058 | biostudies-arrayexpress

Genome-wide transcriptome analysis during dehydration in leaf tissues of Boea hygrometrica

Project description:Gene transcript abundances were analyzed with samples taken from hydrated, moderate dehydration (70% RWC) and desiccated (10% RWC) leaf tissues of resurrection plant species B. hygrometrica by using RNA-Seq. Totally, 9888 genes were identified as differentially expressed genes.The results provided insight for exploring the mechanisms of desiccation tolerance.

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Auxin-binding proteins without KDEL sequence in the moss Funaria hygrometrica.

Project description:Whereas the important plant growth regulator auxin has multiple effects in flowering plants, it induces a specific cell differentiation step in the filamentous moss protonema. Here, we analyse the presence of classical auxin-binding protein (ABP1) homologues in the moss Funaria hygrometrica. Microsomal membranes isolated from protonemata of F. hygrometrica have specific indole acetic acid-binding sites, estimated to be about 3-5 pmol/mg protein with an apparent dissociation constant (K (d)) between 3 and 5 microM. Western analyses with anti-ABP1 antiserum detected the canonical endoplasmic reticulum (ER)-localised 22-24 kDa ABP1 in Zea mays, but not in F. hygrometrica. Instead, polypeptides of 31-33 and 46 kDa were labelled in the moss as well as in maize. In F. hygrometrica these proteins were found exclusively in microsomal membrane fractions and were confirmed as ABPs by photo-affinity labelling with 5-azido-[7-(3)H]-indole-3-acetic acid. Unlike the classical corn ABP1, these moss ABPs did not contain the KDEL ER retention sequence. Consistently, the fully sequenced genome of the moss Physcomitrella patens, a close relative of F. hygrometrica, encodes an ABP1-homologue without KDEL sequence. Our study suggests the presence of putative ABPs in F. hygrometrica that share immunological epitopes with ABP1 and bind auxin but are different from the classical corn ABP1.

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