Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The genome of L. maculans brassicae JN3

ABSTRACT: De novo and updated assembly and annotation of L. maculans brassicae JN3 using Oxford Nanopore MinION sequencing

PROVIDER: PRJEB21523 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

The genome of L. maculans brassicae NZ-T4

Project description:De novo and updated assembly and annotation of L. maculans brassicae NZ-T4 using Oxford Nanopore MinION sequencing

| PRJEB21524 | ENA

Gene expression profile in MS medium for the phytopathogenic fungus Leptosphaeria maculans brassicae (Lmb) and lepidii (Lml)

Project description:Full transcriptomes of Leptosphaeria maculans ‘brassicae’ v23.1.3 and Leptosphaeria maculans ‘lepidii’ IBCN84, grown in Fries medium, were studied.

2021-06-02 | GSE150126 | GEO

The genome of L. biglobosa brassicae G12-14

Project description:De novo and updated assembly and annotation of L. biglobosa brassicae G12-14 using Oxford Nanopore MinION sequencing

| PRJEB21525 | ENA

BNZ

Project description:de novo assembly and annotation of Leptosphaeria maculans JN3 genome using Oxford Nanopore MinION sequencing

| PRJEB24468 | ENA

BNZ

Project description:de novo assembly and annotation of Leptosphaeria maculans NzT4 genome using Oxford Nanopore MinION sequencing

| PRJEB24469 | ENA

Detecting EGFP RNA transcripts by Oxford Nanopore Technology

Project description:We performed direct cDNA sequencing in HeLa GFP∆Promoter cells by Oxford Nanopore Technology (ONT) on a MinION device to detect EGFP RNA levels after DSB induction.

2026-05-15 | E-MTAB-16605 | biostudies-arrayexpress

Leptosphaeria maculans gene expression at the beginning of primary oilseed rape leaf infection

Project description:The transcriptome of Leptosphaeria maculans was analysed in mycelium and during oilseed rape leaf infection. The array probes were designed from gene models from the L. maculans whole genome annotation. One aim of this study was to verify the expression of the automatically annotated gene models in various conditions. Another goal was to monitor gene expression profiles during oilseed rape leaf infection and to highlight tissue-specific transcripts, e.g. in plant up-regulated transcripts for further analyses.

2025-09-01 | GSE55456 | GEO

Brassica nigra challenged by Pieris brassicae, eggs of Pieris brassicae, Xanthomonas campestris pv. raphani, Brevicoryne brassicae or by combined stresses eggs of P. brassicae / P. brassicae, X. campestris / P. brassicae, B. brassicae / P. brassicae

Project description:Brassica nigra plants, a Brassicaceae close to Arabidopsis thaliana, was used for combined stresses experiments. In this study, we performed a whole-genome microarray analysis on five-week-old plants and compared untreated plants and plants treated different single or dual stresses: the larvae Pieris brassicae, egg extract of Pieris brassicae, the bacterial Xanthomonas campestris pv. raphani, the aphid Brevicoryne brassicae or by combined stresses eggs of P. brassicae / P. brassicae, X. campestris / P. brassicae, B. brassicae / P. brassicae.

2017-03-31 | E-MTAB-5059 | biostudies-arrayexpress

Leptosphaeria maculans gene expression during in vitro growth and primary oilseed rape leaf infection

Project description:The transcriptome of Leptosphaeria maculans was analyzed in mycelium and during oilseed rape (Brassica napus) leaf infection. The array probes were designed from gene models from the L. maculans whole genome annotation. One aim of this study was to verify the expression of the automatically annotated gene models in various conditions. Another goal was to monitor gene expression profiles during oilseed rape leaf infection and to highlight tissue-specific transcripts, e.g. in plant up-regulated transcripts, for further analyses.

2011-02-09 | GSE27152 | GEO

Leptosphaeria maculans gene expression during in vitro growth after silencing of DMM1, a gene involved in chromatin remodelling

Project description:The transcriptome of Leptosphaeria maculans was analysed in mycelium of the wild type isolate v23.1.3 or in a transformant silenced for DMM1, a gene encoding an enzyme involved in chromatin remodelling. The array probes were designed from gene models from the L. maculans whole genome annotation. The aim of this study was to characterise the effect of chromatin remodelling on gene expression during in vitro growth.

2025-09-01 | GSE55455 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data