Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Benthic micro-eukaryotic diversity and community structure in a sea cucumber farming system

ABSTRACT: Micro-eukaryotic diversity and community structure of sediments of a sea cucumber farming system in Bohai bay

PROVIDER: PRJEB24124 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2231540_1.fastq.gz	Fastqsanger.gz
	ERR2231540_2.fastq.gz	Fastqsanger.gz
	ERR2231541_1.fastq.gz	Fastqsanger.gz
	ERR2231541_2.fastq.gz	Fastqsanger.gz
	ERR2231542_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Transcriptome landscape during tenderization in sea cucumber Apostichopus japonicus

Project description:The gene expression profiles associated with tenderization in body wall of sea cucumber (Apostichopus japonicus) were determined

2019-03-27 | GSE123077 | GEO

sea cucumber metagenome

Project description:sea cucumber pioneer microbiome

| PRJDB12340 | ENA

sea cucumber metagenome

Project description:sea cucumber metagenome Raw sequence reads

| PRJNA818100 | ENA

Gene expression profile at single cell level of nervous system in sea cucumber.

Project description:nervous system plays key roles in sea cucumber. We used single cell RNA sequencing (scRNA-seq) to analyze the diversity of diverse cells in the nervous system.

2022-09-28 | GSE214016 | GEO

Sea cucumber aquaculture water

Project description:Sea cucumber aquaculture water Raw sequence reads

| PRJNA1322480 | ENA

sea cucumber Apostichopus japonicus

Project description:sea cucumber Apostichopus japonicus Raw sequence reads

| PRJNA622877 | ENA

Sea cucumber intestine microbiome

Project description:Sea cucumber intestine microbiome Raw sequence reads

| PRJNA1322502 | ENA

Integrated analysis of sea cucumber ambient temperature and dissolved oxygen responsive lncRNAs and mRNAs

Project description:In this work, identification of differentially expressed (DE) genes, including lncRNAs and mRNAs, in sea cucumber response to multiple environmental stress, such as thermal, hypoxic and the combined treatment.

2020-04-22 | GSE131676 | GEO

Study on tolerance of Vibrio splendidus to tetracycline and coelomic fluid of sea cucumber

Project description:It was found that Vibrio splendidus could survive under high concentration of tetracycline, and the coelomic fluid of sea cucumber increased the tolerance of Vibrio splendidus to tetracycline. Therefore, the transcriptome was determined to find the cause of drug resistance in Vibrio splendidus.

2023-04-05 | GSE217630 | GEO

High-throughput sequencing reveals differential expression of miRNAs in intestine from sea cucumber during aestivation [microarray]

Project description:The regulatory role of miRNA in gene expression is an emerging hot new topic in the control of hypometabolism. Sea cucumber aestivation is a complicated physiological process that includes obvious hypometabolism as evidenced by a decrease in the rates of oxygen consumption and ammonia nitrogen excretion, as well as a serious degeneration of the intestine into a very tiny filament. To determine whether miRNAs play an important regulatory roles in this process, the present study analyzed profiles of miRNA expression in the intestine of sea cucumber (Apostichopus japonicus), using Solexa deep sequencing technology. We identified 309 sea cucumber miRNAs, including 19 novel miRNAs specific to sea cucumber. Animals sampled during deep aestivation (DA) after at least 15 days of continuous torpor, were compared with animals from a non-aestivation (NA) state (animals that had passed through aestivation and returned to an active state). We identified 42 differentially expressed miRNAs (RPM (reads per million) >10, |FC| (|fold change|) ≥1, FDR<0.01) during aestivation, which were validated by two other miRNA profiling methods: miRNA microarray and real-time PCR. Among the most prominent miRNA species, miR-200-3p, miR-2004, miR-2010, miR-22, miR-252a, miR-252a-3p and miR-92 were significantly over-expressed during deep aestivation compared with non-aestivation animals. Preliminary analyses of their putative target genes suggest that these miRNAs could play important roles in global transcriptional depression during aestivation.

2014-06-06 | GSE48868 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data