Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome of one ostrich female

ABSTRACT: Illumina Miseq paired-end sequencing (2x250) of 550 pb fragment from the genome of one ostrish

PROVIDER: PRJEB24169 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2232540_1.fastq.gz	Fastqsanger.gz
	ERR2232540_2.fastq.gz	Fastqsanger.gz
	ERR2232538_1.fastq.gz	Fastqsanger.gz
	ERR2232538_2.fastq.gz	Fastqsanger.gz
	ERR2232539_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Genome of one red junglefowl female

Project description:Illumina Miseq paired-end sequencing (2x250 or 2x75) of 550 pb fragment from the genome of one red junglefowl

| PRJEB22479 | ENA

peat metagenome

Project description:Illumina MiSeq paired end sequencing

| PRJDB12674 | ENA

Project description:Agalychnis moreletii - shotgun WGS. Illumina MiSeq paired-end.

| PRJNA510299 | ENA

Project description:Illumina MiSeq paired end sequencing of 16S rDNA

| PRJNA830656 | ENA

marine sediment metagenome

Project description:Blanes Canyon-OpenSlope 16S MiSeq 2x250

| PRJNA489177 | ENA

mice feces Illumina Miseq paired-end reads

Project description:mice feces Illumina Miseq paired-end reads Raw sequence reads

| PRJNA1012556 | ENA

RNAseq analysis between hepatocytes isolated from control livers, β1-integrin mutant livers, P21 over-expressed livers and ductal cells.

Project description:RNAseq analysis between cell types. RNA extracted using Qiagen mini total RNA isolation protocols (Qiagen, Germany). Samples were treated with DNase (Ambion), and sample integrity verified on the Agilent Bioanalyser with the RNA Nano chip. Illumina Tru-seq paired end strand specific sequencing (Illumina, USA) was carried out by on a NextSeq-550 sequencer (Edinburgh Clinical Research Facility, Western General Hospital, Edinburgh, Scotland, UK). 500ng of Total RNA underwent ribosomal RNA depletion (rRNA) prior to purification, fragmentation, random hexamer cDNA generation and purification with AMPure XP beads (Beckman-Coulter, USA). Multiple indexing adapters were ligated to ds cDNA with subsequent hybridisation onto flow cells, and DNA fragment enrichment by 15 cycle PCR for sequencing. Completed libraries were quantified by qPCR using the KAPA Illumina Library Quantification Kit (Illumina, USA) before multiplexing in two equimolar pools and running on two flow cells on the Illumina NextSeq 550. The resulting FastQ files were mapped to the reference genome (mm9) using the Tophat alignment tool (V1) on Illumina Basespace software and reads per kilobase per million (RPKM) scores calculated.

2017-07-12 | GSE98034 | GEO

RNAseq analysis between mouse ESCs cultured in serum or plus the EZH2 inhibitor EPZ.

2017-12-01 | GSE101928 | GEO

Miseq Illumina paired-sequencing of 600-bp fragment from one ostrich (paired) female

Project description:Illumina sequencing of one ostrich female

| PRJEB24106 | ENA

The genomes uncoupled dependent signaling pathway coordinates plastid biogenesis with the synthesis of anthocyanins

Project description:Transcriptome profile of Arabidopsis wild-type (Col-0) and mutants of the plastidic retrograde signalling pathway (gun1-1,gun4-1, gun5-1) germinated in the presence of 5µM Norflurazon for 5d in continious light (100µE). Analysis was performed on biological triplicates of total leaf RNA using paired-end Illumina Hi/MiSeq technology.

2019-10-18 | GSE104868 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data