Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: EMG produced TPA metagenomics assembly of the freshwater sediment metagenome Raw sequence reads (freshwater sediment metagenome) data set.

PROVIDER: PRJEB24370 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR3480272.fasta.gz	Fasta.gz
	SRR3992609.fasta.gz	Fasta.gz
	SRR3480281.fasta.gz	Fasta.gz
	SRR3480286.fasta.gz	Fasta.gz
	SRR3480276.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 77

Similar Datasets

Project description:EMG produced TPA metagenomics assembly of PRJNA475895 data set (freshwater metagenome Metagenome).

| PRJEB47474 | ENA

Project description:EMG produced TPA metagenomics assembly of the sediment metagenome Metagenome (sediment metagenome) data set.

| PRJEB26373 | ENA

Project description:EMG produced TPA metagenomics assembly of the sediment metagenome Metagenome (sediment metagenome) data set.

| PRJEB26731 | ENA

Project description:EMG produced TPA metagenomics assembly of the freshwater metagenome Raw sequence reads (freshwater metagenome) data set.

| PRJEB24371 | ENA

Project description:EMG produced TPA metagenomics assembly of the sediment metagenome Raw sequence reads (sediment metagenome) data set.

| PRJEB26106 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA378926 data set (Harbour sediment metagenome).

| PRJEB51561 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA167727 data set (Rifle Sediment Metagenome).

| PRJEB51543 | ENA

LC-MS/MS of autotrophic culture KS, that performs nitrate reduction coupled to iron(II) oxidation (NDFO)

Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

2021-05-17 | PXD023186 | Pride

Project description:EMG produced TPA metagenomics assembly of the sediment bacteria metagenome Metagenome (sediment bacteria) data set.

| PRJEB26208 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA254927 data set (Freshwater habitats river Metagenome).

| PRJEB54020 | ENA