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ABSTRACT: EMG produced TPA metagenomics assembly of the Metal availability predicts community metallogenomes in marine oxygen minimum zones (marine metagenome) data set.

PROVIDER: PRJEB27116 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1509794.fasta.gz	Fasta.gz
	SRR1509793.fasta.gz	Fasta.gz
	SRR1509790.fasta.gz	Fasta.gz
	SRR1509800.fasta.gz	Fasta.gz
	SRR1509792.fasta.gz	Fasta.gz

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marine metagenome

Project description:Metal availability predicts community metallogenomes in marine oxygen minimum zones

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Project description:EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA metagenome (marine metagenome) data set.

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Project description:EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA metagenome (marine metagenome) data set.

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Project description:EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_200m_DNA metagenome (marine metagenome) data set.

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Project description:EMG produced TPA metagenomics assembly of the Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA metagenome (marine metagenome) data set.

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Metabolic flexibility of SUP05 under low DO growth conditions

Project description:Chemoautotrophic bacteria from the SUP05 clade often dominate anoxic waters in marine oxygen minimum zones (OMZs) where reduced sulfur can fuel carbon fixation and denitrification. Some members of the SUP05 clade are facultative aerobes that thrive at the boundaries of OMZs where they experience fluctuations in dissolved oxygen (DO). The degree to which SUP05 contribute to nitrate reduction in these regions depends on their sensitivity to oxygen. We evaluated growth and quantified differences in gene expression in Ca. T. autotrophicus strain EF1 from the SUP05 clade under high DO (22 μM), anoxic, and low DO (3.8 μM) concentrations. We show that strain EF1 cells respire oxygen and nitrate and that cells have higher growth rates, express more genes, and fix more carbon when oxygen becomes available for aerobic respiration. Evidence that facultatively aerobic SUP05 are more active and respire nitrate when oxygen becomes available at low concentrations suggests that they are an important source of nitrite across marine OMZ boundary layers.

2020-06-01 | GSE144480 | GEO

Project description:EMG produced TPA metagenomics assembly of PRJNA305951 data set (Cryptic Oxygen Cycle in the Oxygen Minimum Zones: the role of the Secondary Chlorophyll Maximum).

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