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Microbial communities inhabiting acidic mine-degraded soils

ABSTRACT: The effect of chemical remediation by lime on the compostion of soil microbial communities inhabiting metal-polluted soils

PROVIDER: PRJEB28850 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR2822550_1.fastq.gz	Fastqsanger.gz
	ERR2822550_2.fastq.gz	Fastqsanger.gz
	ERR2822560_1.fastq.gz	Fastqsanger.gz
	ERR2822560_2.fastq.gz	Fastqsanger.gz
	ERR2822570_1.fastq.gz	Fastqsanger.gz

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Project description:Our research goal is to illustrate the potential of gene expression profiling to discriminate between polluted and non-polluted field sites and predict the presence of a specific contaminant. Using a gene expression analysis, we challenged our custom Daphnia magna cDNA microarray to determine the presence of a specific metal toxicant in blinded field samples collected from two copper mines in California. We compared the gene expression profiles from our field samples to previously established expression profiles for Cu, Cd, and Zn. The expression profiles from the Cu containing field samples clustered with the Cu specific gene expression profiles. Many of the previously discovered copper biomarkers were also differentially expressed in the field samples, suggesting that gene expression analysis is capable of producing robust biomarkers of exposure, which can be validated in field studies. In addition, our study revealed that upstream field samples containing undetectable levels of Cu caused the differential expression of only a few genes, lending support for the concept of a No Observed Transcriptional Effect Level (NOTEL). If confirmed by further studies, the NOTEL may play an important role in discriminating polluted and non-polluted sites in future monitoring efforts. Keywords: ecotoxicogenomic exposure study

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Sulfobacillus harzensis sp. nov., an acidophilic bacterium inhabiting mine tailings from a polymetallic mine.

Project description:A mixotrophic and acidophilic bacterial strain BGR 140T was isolated from mine tailings in the Harz Mountains near Goslar, Germany. Cells of BGR 140T were Gram-stain-positive, endospore-forming, motile and rod-shaped. BGR 140T grew aerobically at 25-55 °C (optimum 45 °C) and at pH 1.5-5.0 (optimum pH 3.0). The results of analysis of the 16S rRNA gene sequences indicated that BGR 140T was phylogenetically related to different members of the genus Sulfobacillus, and the sequence identities to Sulfobacillus acidophilus DSM 10332T, Sulfobacillus thermotolerans DSM 17362T, and Sulfobacillus benefaciens DSM 19468T were 94.8, 91.8 and 91.6 %, respectively. Its cell wall peptidoglycan is A1γ, composed of meso-diaminopimelic acid. The respiratory quinone is DMK-6. The major polar lipids were determined to be glycolipid, phospholipid and phosphatidylglycerol. The predominant fatty acid is 11-cycloheptanoyl-undecanoate. The genomic DNA G+C content is 58.2 mol%. On the basis of the results of phenotypic and genomic analyses, it is concluded that strain BGR 140T represents a novel species of the genus Sulfobacillus, for which the name Sulfobacillus harzensis sp. nov. is proposed because of its origin. Its type strain is BGR 140T (=DSM 109850T=JCM 39070T).

| S-EPMC8489842 | biostudies-literature

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