Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of human cancer cell line OVCA420* following TIGAR knockdown with shRNA

ABSTRACT: RNA-seq of human cancer cell line OVCA420* following TIGAR knockdown with shRNA

PROVIDER: PRJEB29129 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2834532_1.fastq.gz	Fastqsanger.gz
	ERR2834532_2.fastq.gz	Fastqsanger.gz
	ERR2834533_1.fastq.gz	Fastqsanger.gz
	ERR2834533_2.fastq.gz	Fastqsanger.gz
	ERR2834534_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

RNA-seq of human cancer cell line OVCA420* following TIGAR knockdown with shRNA

Project description:To identify differentially expressed genes following TIGAR knockdown, OVCA420* was transduced with TIGAR-targeting or non-targeting (control) shRNAs. 54 hours after the transduction, RNA was extracted and Illumina TruSeq RNA Sample Preparation Kit v2 was used to prepare the libraries. Each group contains 3 replicates. NextSeq 500 was used for sequencing.

2018-10-24 | E-MTAB-7284 | biostudies-arrayexpress

E14 cells knockdown with shRNA

Project description:E14 cells knockdown with shRNA

| PRJNA972667 | ENA

RNA sequencing analyses of human liver cancer cell line HepG2 treated with control shRNA and YTHDC1 knockdown shRNA

Project description:RNA sequencing analyses of human liver cancer cell line HepG2 treated with control shRNA and YTHDC1 knockdown shRNA

| PRJEB76853 | ENA

RNA Sequencing Analysis of vascular smooth muscle cell from Wild Type and TIGAR-/- mice

Project description:We identified that global TIGAR deficiency inhibited VSMC dedifferentiation. The purpose of this experiment was to identify how TIGAR inhibited VSMC dedifferentiation.We then performed gene expression profiling analysis using data obtained from RNA-seq of VSMC from WT and TIGAR KO mice stimulated with LPS.

2025-08-26 | GSE303726 | GEO

Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:To identify changes in splicing patterns following TARBP2 knockdown, RNA-sequencing was performed on nuclear RNA extracted from cells expressing shRNAs targeting TARBP2 or a non-targeting shRNA (shControl).

2019-12-26 | GSE130870 | GEO

RNA-seq based transcriptomic profiling of GBM44 glioma cell line with BAT1 shRNA knockdown

Project description:RNA-seq based transcriptomic profiling of GBM44 glioma cell line with BAT1 shRNA knockdown

| PRJNA531692 | ENA

DDR1 knockdown in BXPC3 cell line

Project description:Examination of effect of stable DDR1 knockdown by shRNA on transcriptional profile in BXPC3 cell line to understand role of DDR1 in tumorigenesis.

2014-05-01 | GSE39207 | GEO

Expression changes in Setdb1-knockdown with shRNA in Hepa1-6 cells, a mouse hepatocellular carcinoma line

Project description:SETDB1 is an epigenetic regulator via H3K9me3. Much is not known about the role of SETDB1 in hepatocellular carcinoma. In this study, we established an shRNA-based Setdb1-knockdown strain in the mouse hepatocellular carcinoma line Hepa1-6 and performed RNA sequencing to identify genes regulated by Setdb1.

2024-12-08 | GSE254197 | GEO

mRNA-seq in JURKAT T-ALL cell line upon shRNA knockdown of circN4BP2L2

Project description:We performed mRNA sequencing upon the lentiviral shRNA knockdown of circN4BP2L2 in JURKAT T-ALL cell line compared to non-targeting shRNA transduced cells to characterize the effect of this circRNA on gene expression profile. The cells were collected for RNA isolation 5 days after lentiviral transduction. Libraries were prepared using the TruSeq Stranded mRNA kit (fragmentation at 90 °C for 2 minutes [doi:10.1016/j.ygeno.2021.10.018]). Sequencing was carried out on an Illumina NovaSeqX platform (2×150 bp paired-end, ~150 million read pairs per sample). This work has been supported by National Science Centre, Poland (OPUS 2022/47/B/NZ5/00663).

2026-01-01 | E-MTAB-16358 | biostudies-arrayexpress

E14 cells knockdown with siRNA or shRNA

Project description:E14 cells knockdown with siRNA or shRNA

| PRJNA703646 | ENA