Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

USA300 in St.Kitts and Nevis

ABSTRACT: High prevalence of USA300 on St. Kitts and Nevis

PROVIDER: PRJEB29509 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR2868320_1.fastq.gz	Fastqsanger.gz
	ERR2868320_2.fastq.gz	Fastqsanger.gz
	ERR2868330_1.fastq.gz	Fastqsanger.gz
	ERR2868330_2.fastq.gz	Fastqsanger.gz
	ERR2868340_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 138

Similar Datasets

Gene expression analysis of Staphyloccoccus aureus USA300 vs USA300 agr knockout.

Project description:The study aims to compare gene expression patterns of Staphyloccoccus aureus USA300 wild type (reference) vs USA300 agr knockout(query). The agr quorum sensing system is an important regulator of density dependent gene expression. To determine the role of agr in USA300 virulence a agr mutant was constructed and differential gene expression compared to the parental wildtype.

2011-04-08 | GSE26254 | GEO

Gene expression analysis of Staphyloccoccus aureus USA300 vs USA300 sae knockout

Project description:The study aims to compare gene expression patterns of Staphyloccoccus aureus USA300 vs USA300 sae knockout. Samples were hybridized on aminosilane coated slides with 70-mer oligos.

2011-04-08 | GSE26243 | GEO

Gene expression analysis of Staphyloccoccus aureus USA300 vs USA300 sae knockout

2011-04-08 | E-GEOD-26243 | biostudies-arrayexpress

Gene expression analysis of Staphyloccoccus aureus USA300 vs USA400.

2011-04-08 | GSE26255 | GEO

Evolution of hypervirulence during bloodstream adaptation of CA-MRSA strain USA300

Project description:The epidemic community-acquired methicillin-resistant S. aureus (CA-MRSA) clone USA300 has recently become a leading cause of hospital-associated bloodstream infections (BSI). Leveraging this recent introduction into hospitals and the limited genetic variation across the USA300 strains, we combined microbial comparative genomics with phenotypic analyses to discover adaptive mutations. USA300 isolates from BSI were found to have independently evolved single nucleotide variants in the transcriptional regulator sarZ. sarZ inactivation lead to altered expression of virulence factors, resulting in increased lethality in a murine model of BSI. Thus, USA300 strains can optimize their fitness in hospitals through evolution of higher virulence.

2022-10-08 | GSE185544 | GEO

Gene expression analysis of Staphyloccoccus aureus USA300 vs USA400.

Project description:In the community and clinical settings MRSA infections are more commonly caused by a USA300 strain vs a USA400 strain. The study aims to compare gene expression patterns of Staphyloccoccus aureus USA300(reference) vs USA400(query) and to determine why USA400 is being replaced by a USA300 strain. The USA300 and USA400 isolates were grown in TSA media to early log, mid log, late log and stationary phase. RNA samples were extracted and samples were hybridized on aminosilane coated slides with 70-mer oligos. Differential gene expression patterns were compared between the two strains.

2011-04-08 | E-GEOD-26255 | biostudies-arrayexpress

Evolved Staph-aureus (USA300) With xenobiotics_May2024

Project description:Staph aureus (USA300) evolved with xenobiotics to see the changes in metabolome of bacteria.

2024-06-04 | MSV000094929 | MassIVE

S. aureus gene expression of WT (USA300) vs fakAKO

Project description:S. aureus response to fakA deletion Gene expression profiles were generated by microarray analysis of S. aureus WT (USA300) or fakAKO

2014-08-01 | GSE57340 | GEO

Transcriptomic responses to psychosocial stress in vervet monkey (Chlorocebus sabaeus)

Project description:To identify genes involved in responses to psychosocial stressor, we analysed RNAseq transcriptomic profiles in whole blood of 15 juvenile male vervet monkeys from the Caribbean island of St. Kitts at three experimental time points: day 0 (baseline), day 3 and day 5 of exposure to the stressor.

2019-12-12 | GSE120900 | GEO

Determination of Transcriptional start sites in S. aureus USA300 (JE2) during exponential phase

Project description:Transcriptional start sites determination of USA300 (JE2) by using dRNA-Seq

2016-05-04 | GSE67424 | GEO