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Maize Nested Association Mapping (NAM) genome sequencing and assembly project

ABSTRACT: Genome sequence and assembly of the twenty-five founder lines of the the Nested Association Mapping (NAM) population.

PROVIDER: PRJEB31061 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
		Other
	B97_DLE1_Merged_EXP_REFINEFINAL1.cmap.gz	Other
	CML103_DLE1_EXP_REFINEFINAL1.cmap.gz	Other
	CML228_DLE1_EXP_REFINEFINAL1.cmap.gz	Other

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Reads for NC358 associated with the Maize Nested Association Mapping (NAM) genome sequencing and assembly project

Project description:Illumina and PacBio reads of NC358, one of the twenty-five founder lines of the the Nested Association Mapping (NAM) population.

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RNA-seq samples of ten tissues for each of the 25 genomes of the Nested Associated Mapping (NAM) maize sequencing project

Project description:These RNA-seq samples represent ten different tissue types within a diverse Nested Association Mapping (NAM) maize population that has been sequenced by the NAM Consortium Group. These samples correspond to project IDs PRJEB31061.

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The NLRomes of Zea mays NAM founder lines and Zea Luxurians Display Presence Absence Variation, Integrated Domain Diversity and Mobility

Project description:We analyzed the nucleotide-binding leucine-rich repeat receptors (NLRs) of 26 recently sequenced diverse founder lines from the maize nested association mapping (NAM) population and compared them to the R gene complement present in a wild relative of maize, Zea luxurians.

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CGH: NAM parent lines vs. Wm82-ISU-01

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Project description:Maize is highly sensitive to short term flooding and submergence. We aimed to discover genetic variation for submergence tolerance in maize and elucidate the genetic basis of submergence tolerance through transcriptional profiling of contrasting genotypes. A diverse set of maize nested association mapping (NAM) founder lines were screened, and two highly tolerant (Mo18W and M162W) and sensitive (B97 and B73) genotypes were identified. Transcriptome analysis was performed on these inbreds to provide genome level insights into the molecular responses to submergence.

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RNA-seq samples of ten tissues for each of the 25 genomes of the Nested Associated Mapping (NAM) maize sequencing project

Project description:RNA-seq samples of ten tissues for each of the 25 genomes of the Nested Associated Mapping (NAM) maize sequencing project

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Project description:Soybean nested association mapping (NAM) parent lines were compared by CGH to catalog structurally variant (e.g. deletion and duplication) regions among these genotypes. The CGH comparisons reveal reveal putative deletions and duplications among the 41 lines. NAM parent lines were compared through a common reference, Wm82-ISU-01 (this is a sub-line isolated from the cultivar Williams 82 stock). Each NAM parent line was represented by a single individual plant. The reported values show the log2 ratio of the normalized NAM parent line hybridization signals (Cy3) over the normalized Wm82-ISU-01 hybridization signal (Cy5).

2014-03-30 | E-GEOD-56351 | biostudies-arrayexpress

Genetic and Molecular Characterization of Submergence Response Identifies Subtol6 as a Major Submergence Tolerance Locus in Maize

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Transcriptome profiling of human myogenic progenitors following treatment with nicotinamide (NAM) or pyridoxine (PN) or the combination (NAM/PN).

Project description:Working with primary human myogenic progenitors (hMPs), we developed a high-content screen to discover molecules that enhanced myogenic function and identified NAM and PN as modulators of myogenic proliferation and differentiation. We characterized genome-wide expression profiles of NAM-, PN-treated and NAM/PN-treated hMPs with the goal to uncover the mechanisms of action of NAM and PN and the potential additivity from the combination at the molecular level in hMPs.

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2022-01-05 | GSE183786 | GEO

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