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Comparative transcriptome profiling of the response to Pyrenochaeta lycopersici in resistant tomato cultivar Mogeor and its background genotype - susceptible Moneymaker.

ABSTRACT: Comparative transcriptome profiling of the response to Pyrenochaeta lycopersici in resistant tomato cultivar Mogeor and its background genotype - susceptible Moneymaker.

PROVIDER: PRJEB31276 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR3157980.fastq.gz	Fastqsanger.gz
	ERR3157981.fastq.gz	Fastqsanger.gz
	ERR3157982.fastq.gz	Fastqsanger.gz
	ERR3157973.fastq.gz	Fastqsanger.gz
	ERR3157983.fastq.gz	Fastqsanger.gz

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Comparative transcriptome profiling of the response to Pyrenochaeta lycopersici in resistant tomato cultivar Mogeor and its background genotype - susceptible Moneymaker.

Project description:Pyrenochaeta lycopersici causes corky root disease of tomato. A comparative RNA-Seq-based transcriptome analysis was conducted at 96 hpi (hours post infection) on two tomato cultivars: the resistant Mogeor and its genetic background, susceptible Moneymaker to investigate the differences in their transcripts and identify the molecular bases of this plant-pathogen interaction and gain hints over resistance mechanisms.

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Project description:Transcriptional changes in greenhouse-grown plants of tomato varieties Monaymaker and Mogeor infected with Pyrenochaeta lycopersici compared to uninfected control plants. The objective of the the study was to give an insight into the establishment of compatible and incompatible interactions between tomato and the pathogen using susceptible (Moneymaker) and resistant (Mogeor) varieties of tomato. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Justyna Anna Milc. The equivalent experiment is LE4 at PLEXdb]

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Project description:Background: Fusarium oxysporum f.sp. radicis-lycopersici (FORL) is one of the most destructive necrotrophic pathogen of tomato, causing important field and greenhouse yield losses. Despite the relevant economic impact, little is known about the molecular mechanisms regulating the Fusarium oxysporum f.sp. radicis-lycopersici resistance in tomato. Results: A transcriptomic experiment was carried out in order to investigate major mechanisms of FORL response in resistant and susceptible isogenic tomato lines. The microarray analysis at 15 DPI reveals a distinct gene expression pattern between the two genotypes in the inoculated vs not inoculated conditions, furthermore confirmed by a q-PCR experiment. A model of plant response for both compatible and incompatible reaction was proposed. In particular, in the incompatible interaction an activation of defense genes related to secondary metabolites production and tryptophan metabolism was observed. Moreover, the cell osmotic potential maintenance after the FORL roots challenging was mediated by a dehydration induced protein. As for the compatible interaction the activation of an oxidative burst mediated by Peroxidases and a Cytochrome monooxigenase, conducedthe cells to degeneration and necrosis. Conclusions: Our work allowed a comprehensive understanding of the molecular basis of the tomato-FORL interaction. Result obtained emphasizes a different transcriptional reaction between the resistant and the susceptible genotype to FORL challenging. Our findings could lead to the improvement of strategies of this disease control.

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