Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SSRseq_alosa

ABSTRACT: Sequence based microsatellite genotyping development for Alosa alosa and Alosa fallax.

PROVIDER: PRJEB31908 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3254260.fastq.gz	Fastqsanger.gz
	ERR3254270.fastq.gz	Fastqsanger.gz
	ERR3254280.fastq.gz	Fastqsanger.gz
	ERR3254290.fastq.gz	Fastqsanger.gz
	ERR3254300.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 312

Similar Datasets

SSRseq_armillaria

Project description:Sequence based microsatellite genotyping development for Armillaria species.

| PRJEB31909 | ENA

SSRseq_melipona

Project description:Sequence based microsatellite genotyping development for Melipona variegatipes.

| PRJEB31910 | ENA

SSRseq_salmo

Project description:Sequence based microsatellite genotyping development for Salmo salar.

| PRJEB31914 | ENA

SSRseq_quercus

Project description:Sequence based microsatellite genotyping development for Quercus faginea and Quercus canariensis.

| PRJEB31913 | ENA

Project description:Genetic diversity of Phragmties australis based on High-throughput sequencing-based microsatellite genotyping

| PRJNA1126092 | ENA

Project description:Microsatellite genotyping of Herbertia zebrina

| PRJNA999949 | ENA

Project description:HTS microsatellite genotyping from feces

| PRJNA702144 | ENA

Development of cucumber (Cucumis sativus L.) genotyping array

Project description:Genotyping arrays are tools for high throughput genotyping, which is required in genome-wide association studies (GWAS). Since the first cucumber genome draft was reported, genetic maps were constructed mainly based on simple-sequence repeats (SSRs) or on combinations of SSRs and other sequence-related amplified polymorphism (SRAP). In this study we developed the first cucumber genotyping array which consisted of 32,864 single nucleotide polymorphisms (SNPs). These markers cover the cucumber genome every 2.1Kb and have parents/F1 hybridizations as a training set. The training set was validated with Fludigm technology and had 98% concordance. The application of the genotyping array was illustrated by constructed a genetic map of 600 cM in length based on recombinant inbred lines (RIL) population of a 9930XGy14 cross of which compromise of 11564 SNPs. The markers collinearity between the genetic map and genome references of the two parents estimated as R2=0.97. Moreover, this comparison supports a translocation in the beginning of chromosome 5 that occurred in the lineage of 9930 and Gy14 as well as local variation in the recombination rate. We also used the array to investigate the local allele frequencies along the cucumber genome and found specific region with segregation distortions. We believe that the genotyping array together with the training set would be a powerful tool in applications such as quantitative-trait loci (QTL) analysis and GWAS.

2015-05-01 | GSE57294 | GEO

Project description:Leptodiaptomus sp. Sequence-Based Genotyping

| PRJNA646956 | ENA

Project description:Microsatellite genotyping-by-sequencing for catarrhine primates

| PRJNA672243 | ENA