Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of CaMKII-dependent H3S28p target genes

ABSTRACT: Identification of CaMKII-dependent H3S28p target genes

PROVIDER: PRJEB32860 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3349980.fastq.gz	Fastqsanger.gz
	ERR3349981.fastq.gz	Fastqsanger.gz
	ERR3349982.fastq.gz	Fastqsanger.gz
	ERR3349973.fastq.gz	Fastqsanger.gz
	ERR3349983.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Identification of CaMKII-dependent H3S28p target genes

Project description:To identify direct CaMKII-dependent downstream genes of H3S28p we used chromatin-immunoprecipitation followed by massive parallel DNA sequencing (ChIPseq) analysis of isolated adult murine cardiomyocytes from CamKII WT as well as from CaMKIIγ/CaMKIIδ double knockout (DKO) . DKO and WT cells were subjected to long-term Iso treatment for 24 h to maximize CaMKII-dependent H3S28p.

2019-06-13 | E-MTAB-8011 | biostudies-arrayexpress

Identification of LIN-29 target genes

Project description:Identification of LIN-29 target genes

| PRJNA485538 | ENA

Identification of NOTCH3 unique target genes

Project description:Identification of NOTCH3 unique target genes

| PRJNA524386 | ENA

Identification of CaMKII splice variants expressed in the human hippocampus

Project description:Purpose: The goal of this study was to use deep sequencing to identify all splice variants of Calcium/calmodulin-dependent kinase II (CaMKII) expressed in the human hippocampus. Methods: Transcripts of CaMKII-encoding genes (CAMK2A, CAMK2B, CAMK2G, and CAMK2D) were sub-amplified by PCR from total RNA extracted from human hippocampal tissue samples from 3 donors. Illumina sequencing libraries were constructed by PCR from these initial pools of amplicons and sequenced on an Illumina MiSeq instrument. Sequencing reads passing quality controls were clustered on the basis of sequence identity or near-identity. Consensus sequences of clusters were mapped with known exons of CaMKII genes to identify the splice variant represented by each cluster. Donor 1 replicate 2, Donor 2, and Donor 3 libraries from genes CAMK2B, CAMK2G, and CAMK2D were first sequenced on a MiSeq Nano flow cell, then re-pooled for read balancing and sequenced again of a full-size MiSeq flow cell. For each library, reads from Nano and full-size flow cells were combined for subsequent analysis. Results: We perfomed the first comprehensive survey of CaMKII transcripts expressed in individual tissue samples (human hippocampus). We detected a total of 79 splice variants of the four human CaMKIIs: CaMKIIα (3), CaMKIIβ (30), CaMKIIγ (24), and CaMKIIδ (22), across tissue samples from 3 donors. This represents the vast majority of possible in-frame CaMKII splice variants (Sloutsky and Stratton, European Journal of Neuroscience, 2020; https://doi.org/10.1111/ejn.14761).

2020-07-21 | GSE154030 | GEO

Identification of DDX5 target genes in spermatogonia

Project description:Identification of DDX5 target genes in spermatogonia

| PRJNA433512 | ENA

Genome-wide identification of PPD2 target genes

Project description:Genome-wide identification of PPD2 target genes

| PRJEB7643 | ENA

Identification of miR-203a target genes [RIP-seq]

Project description:Identification of miR-203a target genes [RIP-seq]

| PRJNA1025013 | ENA

Identification of the downstream target genes of TGFbeta

Project description:Identification of the downstream target genes of TGFbeta