Diarrheal Metagenomics
Ontology highlight
ABSTRACT:
PROVIDER: PRJEB35214 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| ERR3639940_1.fastq.gz | Fastqsanger.gz | |||
| ERR3639940_2.fastq.gz | Fastqsanger.gz | |||
| ERR3639950_1.fastq.gz | Fastqsanger.gz | |||
| ERR3639950_2.fastq.gz | Fastqsanger.gz | |||
| ERR3639941_1.fastq.gz | Fastqsanger.gz |
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Project description:By unbiased deep sequencing, we identified a novel, highly divergent polyomavirus, provisionally named MX polyomavirus (MXPyV), in stool samples from children. From Mexico, 12 samples (out of 96) were positive for MxPyV by MXPyV-specific PCR. We used the ViroChip microarray and PCR to screen these 12 samples for co-infection with common diarrheal viruses. Six of 12 MxPyV-positive diarrheal samples tested negative by the ViroChip and PCR, and the other 6 samples were positive for at least one known diarrheal virus. The ViroChip microarray (version 5.0, Viro5AG-60K platform, GPL15905) was used to screen RNA extracts from MX polyomavirus (MXPyV)-positive pediatric diarrheal samples from Mexico for common diarrheal viruses.
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