Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Microbiome rhizosphere associated with wild Andean Blueberry

ABSTRACT: Microbiome rhizosphere associated with wild Andean Blueberry, Ecuador

PROVIDER: PRJEB35843 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3774170_1.fastq.gz	Fastqsanger.gz
	ERR3774170_2.fastq.gz	Fastqsanger.gz
	ERR3774180_1.fastq.gz	Fastqsanger.gz
	ERR3774180_2.fastq.gz	Fastqsanger.gz
	ERR3774190_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 172

Similar Datasets

Analysis of Transcriptomics and Rhizosphere Fungal Diversity in Different Tissues of Blueberry under Cadmium Stress

Project description:In this study, blueberry transcriptomics and rhizosphere fungal diversity were analyzed by simulated potting method to treat blueberries with Cd stress, and the content of Fe, Mn, Cu, Zn and Cd in each tissue, soil and DGT of blueberries were determined. , Combined with transcriptomics for correlation analysis. A total of 84374 annotated genes were obtained in blueberry roots, stems, leaves and fruits, of which 3370 DEGs were found, and DEGs in the stem accounted for the highest proportion, totaling 2521. The annotation results show that these DEGs are mainly concentrated in a series of metabolic pathways related to signal transduction, defense and pathogenic response. Blueberries transfer excess Cd from the root to the stem for storage. The stem contains the highest Cd content, which is consistent with the transcriptomics analysis results, while the fruit contains the lowest Cd content. Correlation analysis between heavy metal content and transcriptomics results in each tissue was carried out, and a series of genes related to Cd regulation were screened. The blueberry root system relies on mycorrhiza to absorb nutrients in the soil. The intervention of Cd has severely affected the microflora structure of the blueberry rhizosphere soil. Coniochaetaceae, which is extremely tolerant, has gradually become the dominant population.

2021-08-25 | GSE168446 | GEO

blueberry rhizosphere soil

Project description:blueberry rhizosphere soil Raw sequence reads

| PRJNA1102520 | ENA

Phosphate solubilizing microorganisms in blueberry rhizosphere

Project description:Phosphate solubilizing microorganisms in blueberry rhizosphere

| PRJEB33846 | ENA

Phaseolus vulgaris isolate:Wild Andean Population Pool

Project description:Phaseolus vulgaris isolate:Wild Andean Population Pool Genome sequencing

| PRJNA337409 | ENA

The preceding root system drives the rhizosphere microbiome

Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

2020-03-06 | GSE146427 | GEO

Microbiota alteration upon blueberry consumption

Project description:We demonstrate that blueberry supplementation led to global changes in the gut microbiome, which could possibly contribute to physiological changes in mice

2021-01-13 | GSE161772 | GEO

blueberry root-associated microbiome

Project description:blueberry root-associated microbiome Raw sequence reads

| PRJNA1156347 | ENA

rhizosphere microbiome of Dongxiang wild rice

Project description:rhizosphere microbiome of Dongxiang wild rice Raw sequence reads

| PRJNA520770 | ENA

blueberry degradome

Project description:blueberry degradome

| PRJEB23597 | ENA

blueberry degradome

Project description:blueberry degradome