Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Open chromatin profiling (ATAC-Seq) from genetically diverse crosses of Drosophila melanogaster during embryogenesis

ABSTRACT: Open chromatin profiling (ATAC-Seq) from genetically diverse crosses of Drosophila melanogaster during embryogenesis

PROVIDER: PRJEB37088 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3975740_1.fastq.gz	Fastqsanger.gz
	ERR3975740_2.fastq.gz	Fastqsanger.gz
	ERR3975750_1.fastq.gz	Fastqsanger.gz
	ERR3975750_2.fastq.gz	Fastqsanger.gz
	ERR3975760_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 160

Similar Datasets

Strand-specific RNA-Seq from genetically diverse crosses of Drosophila melanogaster during embryogenesis

Project description:Strand-specific RNA-Seq from genetically diverse crosses of Drosophila melanogaster during embryogenesis

| PRJEB37085 | ENA

Single-cell chromatin accessibility profiling of genetically diverse crosses of Drosophila melanogaster during embryogenesis

Project description:Single-cell chromatin accessibility profiling of genetically diverse crosses of Drosophila melanogaster during embryogenesis

| PRJEB43718 | ENA

Open chromatin profiling (ATAC-Seq) from genetically diverse crosses of Drosophila melanogaster during embryogenesis

Project description:Open chromatin profiling using Tn5 (ATAC-Seq) for 200,000 nuclei per sample using a panel of 8 F1 hybid D. melanogaster lines. Matched data from the two parental lines of one F1 cross were also collected. All paternal fly lines were taken from the Drosophila Genetic Reference Panel crossed to a common mother (PMID31308546). Data were collected at three time points (2-4h, 6-8h, 10-12h at 25C) with two biological replicates per collection.

2020-12-04 | E-MTAB-8879 | biostudies-arrayexpress

Single-cell chromatin accessibility profiling of genetically diverse crosses of Drosophila melanogaster during embryogenesis

Project description:Study of context-specific regulation during different developmental time windows of Drosophila melanogaster embryogenesis. Single cell chromatin accessibility was profiled by sciATAC-seq in F1 hybrid embryos obtained by crossing males from four genetically distinct inbred lines from the DGRP collection (Mackay et al. 2012) to females from a common maternal “virginizer” line. F1 embryos were profiled at three key stages of embryonic development: 2-4 hours, 6-8 hours and 10-12 hours after egg laying.

2021-12-21 | E-MTAB-10240 | biostudies-arrayexpress

Whole genome sequencing of a panel of genetically diverse crosses of Drosophila melanogaster

Project description:Whole genome sequencing of a panel of genetically diverse crosses of Drosophila melanogaster

| PRJEB37083 | ENA

Strand-specific RNA-Seq from genetically diverse crosses of Drosophila melanogaster during embryogenesis

Project description:Full-length, directional RNA-Seq data from a panel of 8 F1 hybid D. melanogaster lines along with matched RNA-Seq data from the two parental lines for one of the F1 crosses. All paternal fly lines were taken from the Drosophila Genetic Reference Panel crossed to a common mother (PMID31308546). Data were collected at three time points (2-4h, 6-8h, 10-12h at 25C) with two biological replicates per collection.

2020-12-03 | E-MTAB-8878 | biostudies-arrayexpress

Histone modification profiling (using the iChIP protocol) for two markers of regulatory activity (H3K4me3, H3K27ac) from a panel of genetically diverse crosses of Drosophila melanogaster during embryogenesis

Project description:Histone modification profiling (using the iChIP protocol) for two markers of regulatory activity (H3K4me3, H3K27ac) from a panel of genetically diverse crosses of Drosophila melanogaster during embryogenesis

| PRJEB37091 | ENA

Punic people were genetically diverse with almost no Levantine ancestors

Project description:Punic people were genetically diverse with almost no Levantine ancestors

| PRJEB86313 | ENA

Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice

Project description:Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice

| PRJNA689305 | ENA

Open chromatin maps of genetically different yeast strains

Project description:Open chromatin provides access to a wide spectrum of DNA binding proteins for DNA metabolism processes such as transcription, repair, recombination, and replication. In this regard, open chromatin profiling has been widely used to identify the location of regulatory regions, including promoters, enhancers, insulators, silencers, replication origins, and recombination hotspots. For a quantitative getic analysis of chromatin regulation, we generated open chromatin maps of 100 yeast samples including the parental strains (BY and RM, and two replicates for each) and their descendants by using the FAIRE-seq technique Open chromatin in two parental strains and 94 segregants of their crossing

2012-11-02 | E-GEOD-33466 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data