Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bioimmigrants Oomycetes

ABSTRACT: DNA metabarcoding reveals broad presence of plant pathogenic oomycetes in soil from internationally traded plants

PROVIDER: PRJEB40676 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4658170.fastq.gz	Fastqsanger.gz
	ERR4658170_1.fastq.gz	Fastqsanger.gz
	ERR4658170_2.fastq.gz	Fastqsanger.gz
	ERR4658180_1.fastq.gz	Fastqsanger.gz
	ERR4658180_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 312

Similar Datasets

Oomycetes

Project description:Oomycetes target enrichment

| PRJNA657516 | ENA

Oomycetes

Project description:Oomycetes Raw sequence reads

| PRJNA417859 | ENA

oomycetes

Project description:oomycetes Raw sequence reads

| PRJNA1247250 | ENA

Oomycetes involved in ARD

Project description:Oomycetes involved in Apple Replant Disease

| PRJEB23258 | ENA

Root fungi and oomycetes

Project description:Root fungi and oomycetes Raw sequence reads

| PRJNA532765 | ENA

sRNA characteristics in oomycetes with diverse hosts

Project description:Sequencing of sRNAs from oomycetes species with different lifestyles, inluding plant pathogens and biocontrol organisms

| PRJEB55987 | ENA

Transcriptome analysis of phosphonate-pretreated tomato in response to inoculation with Phytophthora parasitica

Project description:Phosphonate related fungicides such as neutralized phosphorous acid (NPA) are effective for the control of plant diseases caused by Oomycetes including Phytophthora parasitica. It has been proposed that phosphonate may induce plant resistance. However, the mechanism underlying phosphonate-induced resistance remains unclear. The purpose of this study is to identify genes that are differentially expressed in phosphonate-pretreated tomato plants in response to inoculation with Phytophthora parasitica.

2017-08-01 | GSE40164 | GEO

The Arabidopsis kinase YODA regulates non-canonical immune responses conferring broad-spectrum disease resistance

Project description:Mitogen-activated protein kinases (MAPK) cascades play essential roles in plants and animals by transducing developmental cues and environmental signals into cellular responses. Among the latter are microbe-associated molecular patterns perceived by plant pattern recognition receptors (PRRs), which trigger immunity. We found that YODA (YDA), a MAPK kinase kinase regulating several Arabidopsis developmental processes, like stomatal and embryo patterning, also modulates immune responses. Resistance to pathogens is compromised in a yda11 hypomorphic allele whereas plants expressing the constitutively active YDA (CA-YDA) protein show broad-spectrum disease resistance to necrotrophic and biotrophic fungi, bacteria and oomycetes. We found that YDA functions downstream ERECTA (ER) Receptor-Like Kinase regulating both immunity and stomatal patterning. ER/YDA-mediated immune responses act in parallel to canonical disease resistance pathways regulated by defensive phytohormones and PRRs, like FLS2 and CERK1, which are required for bacterial and fungal resistance, respectively. CA-YDA plants constitutively express defense-associated genes and exhibit altered cell wall integrity, which contribute to their broad-spectrum disease resistance. CA-YDA plants also show a strong reprogramming of their phosphoproteome, which contains protein targets that do not significantly overlap with described plant MAPKs substrates. Our data suggest that plants might have evolutionarily co-opted the stomata development pathway regulated by ER/YDA to generate a novel immune surveillance system that is distinct from the canonical immune pathways mediated by previously described PRRs and plant defensive hormones.

2018-02-21 | PXD006988 | Pride

Transcriptomic analysis of pea during interaction with Phytophthora pisi and Aphanomyces euteiches

Project description:This experiment captures the gene expression data from pea roots during interaction with two pathogenic oomycetes: Phytophthora pisi and Aphanomyces euteiches, at 6 hours and 20 hours after infection and the control samples at each time point. In this experiment medicago genome array is used.

2015-10-01 | E-MTAB-3748 | biostudies-arrayexpress

Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome

Project description:Oomycetes from the genus Phytophthora are fungus-like plant pathogens that are devastating for agriculture and natural ecosystems. Due to particular physiological characteristics, no treatments against diseases caused by oomycetes are presently available. To develop such treatments, it appears essential to dissect the molecular mechanisms that determine the interaction between Phytophthora species and host plants. The present project is focused on the molecular mechanisms that underlie the compatible plant-oomycete interaction and plant disease. The laboratory developed a novel interaction system involving the model plant, Arabidopsis thaliana, and Phytophthora parasitica, a soil-borne pathogen infecting a wide host range, thus representing the majority of Phytophthora species. A characteristic feature of the compatible Arabidopsis/P. parasitica interaction is an extended biotrophic phase, before infection becomes necrotrophic. Because the initial biotrophic phase is extremely short on natural (e.g. solanaceous) hosts, the Arabidopsis system provides the opportunity to analyze, for both interaction partners, the molecular events that determine the initiation of infection and the switch to necrotrophy. The present project aims at analyzing the compatible interaction between A. thaliana roots and P. parasitica. The Affymetrix A. thaliana full genome chip will be used to characterize modulations of the transcriptome occurring over a period of 24h from the onset of plant root infection to the beginning of necrotrophy. Parallel to this study, a custom-designed P. parasitica biochip will enable analyzing of P. parasitica gene expression during the same stages. 10 samples were used in this experiment.

2010-04-28 | E-GEOD-20226 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data