Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Non-industrial dental plaque from Cameroon

ABSTRACT: Dental plaque microbiomes from hunter-gatherer and subsistence farmer populations in Cameroon

PROVIDER: PRJEB42572 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10083900_1.fastq.gz	Fastqsanger.gz
	ERR10083900_2.fastq.gz	Fastqsanger.gz
	ERR10083901_1.fastq.gz	Fastqsanger.gz
	ERR10083901_2.fastq.gz	Fastqsanger.gz
	ERR10083902_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 476

Similar Datasets

Project description:EMG produced TPA metagenomics assembly of PRJEB42572 data set (Dental plaque microbiomes from hunter-gatherer and subsistence farmer populations in Cameroon).

| PRJEB64259 | ENA

Natural selection has contributed to functional immune response differences between human hunter-gatherers and agriculturalists

Project description:The shift from a hunter-gatherer (HG) to an agricultural (AG) mode of subsistence is believed to have been associated with profound changes in the burden and diversity of pathogens across human populations. Yet, the extent to which the advent of agriculture impacted the evolution of the human immune system remains unknown. Here we present a comparative study of variation in the transcriptional responses of peripheral blood mononuclear cells (PBMCs) to bacterial and viral stimuli between the Batwa, a rainforest hunter-gatherer, and the Bakiga, an agriculturalist population from Central Africa. We observed increased divergence between hunter-gatherers and farmers in the transcriptional response to viruses compared to that for bacterial stimuli. We demonstrate that a significant fraction of these transcriptional differences are under genetic control, and we show that positive natural selection has helped to shape population differences in immune regulation. Unexpectedly, we found stronger signatures of recent natural selection in the rainforest hunter-gatherers, which argues against the popularized notion that shifts in pathogen exposure due to the advent of agriculture imposed radically heightened selective pressures in agriculturalist populations.

2018-09-27 | GSE120502 | GEO

Dental plaque

Project description:Dental plaque Genome sequencing

| PRJNA890880 | ENA

Dental plaque

Project description:Dental plaque Raw sequence reads

| PRJNA1378055 | ENA

Dental Plaque

Project description:Dental Plaque Targeted loci environmental

| PRJNA589851 | ENA

dental plaque

Project description:Metatranscriptomics studies on dental plaque

| PRJEB7590 | ENA

Dental plaque

Project description:Metagenomics reveals dental plaque in patients

| PRJNA956492 | ENA

dental plaque

Project description:Phageome in dental plaque of periodontitis

| PRJNA1150728 | ENA

Dental Plaque Microbiome

Project description:Dental Plaque Microbiome Targeted loci environmental

| PRJNA844221 | ENA

Complete Genomes of a Hunter-Gatherer and a Bantu from Southern Africa

Project description:The genetic structure of the indigenous hunter-gatherer peoples of Southern Africa, the oldest known lineage of modern man, holds an important key to understanding humanity's early history. Previously sequenced human genomes have been limited to recently diverged populations. Here we present the first complete genome sequences of an indigenous hunter-gatherer from the Kalahari Desert and of a Bantu from Southern Africa, as well as protein-coding regions from an additional three hunter-gatherers from disparate regions of the Kalahari. We characterize the extent of whole-genome and exome diversity among the five men, reporting 1.3 million novel DNA differences genome-wide, and 13,146 novel amino-acid variants. These data allow genetic relationships among Southern African foragers and neighboring agriculturalists to be traced more accurately than was previously possible. Adding the described variants to current databases will facilitate inclusion of Southern Africans in medical research efforts.

2010-02-18 | GSE19048 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data