Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacterial community composition in Panchagavya

ABSTRACT: Bacterial community composition in Panchagavya, an organic agriculture input as revealed by Next Generation Sequencing

PROVIDER: PRJEB43256 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR5350725_1.fastq.gz	Fastqsanger.gz
	ERR5350725_2.fastq.gz	Fastqsanger.gz
	ERR5350726_1.fastq.gz	Fastqsanger.gz
	ERR5350726_2.fastq.gz	Fastqsanger.gz
	ERR5350727_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Fungal community composition in Panchagavya

Project description:Fungal community composition in Panchagavya, an organic agriculture input as revealed by Next Generation Sequencing of ITS sequences

| PRJEB43288 | ENA

Bacteria

Project description:Bacterial community composition in Panchagavya, an organic agriculture input as revealed by Next Generation Sequencing

| PRJDB11279 | ENA

fermentation metagenome

Project description:Bacterial diversity in Panchagavya, an organic agriculture input

| PRJNA701867 | ENA

bacterial community composition

Project description:bacterial community composition Raw sequence reads

| PRJNA1065110 | ENA

Allele specific expression and bacterial community composition in the Drosophila gut

Project description:The pervasiveness of gene expression variation and its contribution to phenotypic variation and evolution is well known. This gene expression variation is context dependent, with differences in regulatory architecture often associated with intrinsic and environmental factors, and is modulated by regulatory elements that can act in cis (linked) or in trans (unlinked) relative to the genes they affect. So far, little is known about how this genetic variation affects the evolution of regulatory architecture among closely related tissues during population divergence. To address this question, we analyzed gene expression in the midgut, hindgut, and Malpighian tubule as well as microbiome composition in the two gut tissues in four Drosophila melanogaster strains and their F1 hybrids from two divergent populations: one from the derived, European range and one from the ancestral, African range. In both the transcriptome and microbiome data, we detected extensive tissue- and genetic background-specific effects, including effects of genetic background on overall tissue specificity. Tissue-specific effects were typically stronger than genetic background-specific effects, although the two gut tissues were not more similar to each other than to the Malpighian tubules. An examination of allele specific expression revealed that, while both cis and trans effects were more tissue-specific in genes expressed differentially between populations than genes with conserved expression, trans effects were more tissue-specific than cis effects. Despite there being highly variable regulatory architecture, this observation was robust across tissues and genetic backgrounds, suggesting that the expression of trans variation can be spatially fine-tuned as well as or better than cis variation during population divergence and yielding new insights into cis and trans regulatory evolution.

2024-07-31 | GSE263264 | GEO

bacterial community composition of Hyalesthes obsoletus

Project description:bacterial community composition of cicada

| PRJEB13010 | ENA

Bacterial community composition (16S rRNA)

Project description:Bacterial diversity , community composition (16S rRNA), odor compounds and fluorescence components of pipe biofilms from drinking water distribution systems

| PRJEB73275 | ENA

bacterial diversity and community composition

Project description:Study of bacterial diversity and community composition in artificial pit mud used for fermentation of Chinese Strong Flavor Liquor

| PRJEB19195 | ENA

Bacterial skin community composition of tadpoles

Project description:Skin microbiome composition of tadpoles of three different amphibian species (Alytes obstetricans, Rana temporaria, Bufo bufo)

| PRJEB46609 | ENA

soil bacterial community composition with different amendments

Project description:soil bacterial community composition with different amendments Raw sequence reads

| PRJNA601828 | ENA