Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GapN deletion improves clostridial solvent yield

ABSTRACT: Deletion of glyceraldehyde-3-phosphate dehydrogenase (gapN) in Clostridium saccharoperbutylacetonicum N1-4(HMT) using CLEAVE™ increases the ATP pool and accelerates solvent production

PROVIDER: PRJEB45403 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR5992600_1.fastq.gz	Fastqsanger.gz
	ERR5992600_2.fastq.gz	Fastqsanger.gz
	ERR5992601_1.fastq.gz	Fastqsanger.gz
	ERR5992601_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Clostridium saccharoperbutylacetonicum N1-4(HMT)

Project description:Clostridium saccharoperbutylacetonicum N1-4(HMT) Genome sequencing

| PRJNA60605 | ENA

Clostridium saccharoperbutylacetonicum N1-4(HMT)

Project description:Clostridium saccharoperbutylacetonicum N1-4(HMT) Raw sequence reads

| PRJNA800770 | ENA

Clostridium saccharoperbutylacetonicum N1-4(HMT) strain:ATCC 27021

Project description:Clostridium saccharoperbutylacetonicum N1-4(HMT) strain:ATCC 27021 Genome sequencing and assembly

| PRJNA186901 | ENA

Clostridium saccharoperbutylacetonicum strain:N1-504

Project description:Clostridium saccharoperbutylacetonicum N1-504

| PRJNA322814 | ENA

Adaptive laboratory evolution restores solvent tolerance in the plasmid-cured Pseudomonas putida S12; a global transcriptional analysis

Project description:Pseudomonas putida S12 is an inherently solvent-tolerant strain and constitutes a promising platform for biotechnology applications in whole-cell biocatalysis of aromatic compounds. The genome of P. putida S12 consists of a 5.8 Mbp chromosome and a 580 kbp megaplasmid pTTS12. pTTS12 encodes several genes which enable the tolerance to various stress conditions, including the main solvent efflux pump SrpABC. Removal (curing) of megaplasmid pTTS12 and subsequent loss of solvent efflux pump SrpABC caused a significant reduction in solvent tolerance of the resulting strain. In this study, we succeeded in restoring solvent tolerance in the megaplasmid-cured P. putida S12 using adaptive laboratory evolution (ALE) and molecular analysis to investigate the intrinsic solvent tolerance of P. putida S12. RNA-seq was performed to study the global transcriptomic response of the solvent-adapted plasmid-cured P. putida S12 in the presence of toluene. This analysis revealed the downregulation of ATP synthase, flagella and other RND efflux pumps, which indicates the importance of maintaining proton motive force during solvent stress.

2021-02-24 | GSE144045 | GEO

Solvent tolerant bacteria

Project description:Solvent tolerant bacteria from hydrocarbon contaminated habitats

| PRJEB41203 | ENA

MDMs Solvent, AA, IL6, AA+IL6

Project description:MDMs Solvent, AA, IL6, AA+IL6

| PRJEB36942 | ENA

Macrophages Solvent, AA, LPS, AA+LPS

Project description:Macrophages Solvent, AA, LPS, AA+LPS

| PRJEB47005 | ENA

Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene

Project description:Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene

| PRJNA341451 | ENA

Effect of XCT790 on Aortic Valves (AV) in NOTCH1 (N1)-Haploinsufficient Mice

Project description:RNA-seq on aortic valves from WT vs N1-haploinsufficient telomere-shortened (generation 2 Terc-/-) mice with either healthy AVs or AV stenosis treated with control solvent or XCT790

2021-01-01 | GSE152061 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data