Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

AOA_amoA_pH

ABSTRACT: Amplicon study of Nitrososphareales responding to pH changes

PROVIDER: PRJEB47407 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR6663000.fastq.gz	Fastqsanger.gz
	ERR6663010.fastq.gz	Fastqsanger.gz
	ERR6663020.fastq.gz	Fastqsanger.gz
	ERR6663030.fastq.gz	Fastqsanger.gz
	ERR6663040.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

Nitrospira_nxrB_pH_experiment

Project description:Amplicon study of Nitrospira responding to pH changes

| PRJEB47406 | ENA

CMX_pH_exp

Project description:Amplicon study of comammox Nitrospira responding to pH changes

| PRJEB47390 | ENA

Epigenetic regulation of gonadal and brain aromatase expression in a cichlid fish with environmental sex determination

Project description:We examined the methylation state of upstream intergenic regions associated with two aromatase genes (cyp19a1A and cyp19a1B) in P. pulcher, a cichlid fish with pH-based sex and male morph determination. Methylation levels in fry head and trunk and adult brain and gonad samples were assessed with a bisulfite amplicon sequencing assay and sequence data was processed through two pipelines to determine % methylation of individual CpG sites and abundance of specific patterns of methylated and unmethylated CpGs (i.e., epialleles).

2020-07-20 | GSE135681 | GEO

pH regulates white-opaque switching and sexual mating in Candida albicans

Project description:As a successful commensal and pathogen of humans, Candida albicans encounters a wide range of environmental changes. Among them, ambient pH is an important factor, which changes frequently and affects many biological processes in this species. The ability to adapt to pH changes is tightly linked with pathogenesis and morphogenesis. In this study, we report that pH has a profound effect on white-opaque switching and sexual mating in C. albicans. Acidic pHs promote white-to-opaque switching but repress sexual mating of opaque cells. The cAMP signaling and Rim101-mediated pH sensing pathways are involved in the regulation of pH-regulated white-opaque switching. Interestingly, white and opaque cells of the cyr1/cyr1 mutant, which is defective in producing cAMP, show distinct growth defects under acidic and alkaline conditions. Phr2 could play a major role in acidic pHs-induced opaque cell formation. We further discover that acidic pH conditions repress sexual mating due to the failure of activation of the Ste2-mediated a-pheromone response pathway. The effects of pH changes on phenotypic switching and sexual mating could be a balance behavior between host adaptation and sexual reproduction.

2015-12-30 | GSE67101 | GEO

Genome-wide analysis of gene expression by B. subtilis biofilms grown in buffered or minimally buffered conditions,

Project description:Analysis of B. subtilis biofilm metabolism at gene expression level. The hypothesis tested in the present study was that extracellular pH and environmental buffer influence the biofilm development. Results provide important information of the response of biofilms to changes in extracellular pH.

2023-05-12 | GSE231939 | GEO

Environmental and genetic regulation of white-opaque switching in Candida tropicalis

Project description:Phenotypic switching is a strategy by which microbial organisms adapt to environmental changes. The human fungal pathogens, Candida albicans and Candida tropicalis, are closely related species and capable of undergoing morphological transitions. C. albicans primarily exists in human or warm-blooded animals as a commensal, whereas C. tropicalis not only exists as a commensal but also is widely distributed in the environment. In this study, To elucidate the regulatory mechanism of environmental pH on white-opaque switching in C. tropicalis, we performed RNA-Seq analysis under three pH conditions (pH 5.0, pH 7.0, and pH 8.0).

2018-08-01 | GSE101999 | GEO

Host proteomic reponses to microsporidian factors

Project description:Identification of host proteomic changes responding to microsporidia and microsporidian factors

2025-05-08 | PXD063753 |

Amplicon sequencing of a K562 cell line model with a patient-based t(3;8) translocation following CRISPR treatment

Project description:Genome editing was conducted on a t(3;8) K562 model to investigate the effects of deleting different modules or CTCF binding sites within the MYC super-enhancer. To check mutations after targeting with CRISPR-Cas9 we performed amplicon sequencing using the Illumina PCR-based custom amplicon sequencing method using the TruSeq Custom Amplicon index kit (Illumina). The first PCR was performed using Q5 polymerase (NEB), the second nested PCR with KAPA HiFi HotStart Ready mix (Roche). Samples were sequenced paired-end (2x 250bp) on a MiSeq (Illumina).

2021-07-26 | E-MTAB-9937 | biostudies-arrayexpress

ChIP-on-chip of OmpR binding in Salmonella enterica serovar Typhimurium strain SL1344 and E.scherichia coli strain CSH50 at pH 7 and pH 4.5 including analysis of OmpR binding in SL1344 in the absence and presence of novobiocin (25 μg/ml)

Project description:OmpR is a DNA binding protein belonging to the OmpR/EnvZ two component system. This system is known to sense changes in osmolarity in Escherichia coli. Recently, OmpR in Salmonella enterica serovar Typhimurium was found to be activated by acidic pH and DNA relaxation. In this study, ChIP-on-chip was employed to ascertain the genome-wide distribution of OmpR in Salmonella Typhimurium and Escherichia coli in acidic and neutral pH. In addition we investigated the affect of DNA relaxation on OmpR binding in Salmonella Typhimurium.

2014-03-27 | GSE49914 | GEO

Homo sapiens

Project description:Transcriptional changes induced by bevacizumab combination therapy in responding and non-responding recurrent glioblastoma patients

| PRJNA316676 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data