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Microscale dynamics of dark zone alterations in Lascaux Cave shows brutal microbial community collapse

ABSTRACT: Microscale dynamics of dark zone alterations in Lascaux Cave shows brutal microbial community collapse

PROVIDER: PRJEB48916 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	ERR7416550_1.fastq.gz	Fastqsanger.gz
	ERR7416550_2.fastq.gz	Fastqsanger.gz
	ERR7416560_1.fastq.gz	Fastqsanger.gz
	ERR7416560_2.fastq.gz	Fastqsanger.gz

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Project description:BackgroundCave anthropization related to rock art tourism can lead to cave microbiota imbalance and microbial alterations threatening Paleolithic artwork, but the underpinning microbial changes are poorly understood. Caves can be microbiologically heterogeneous and certain rock wall alterations may develop in different rooms despite probable spatial heterogeneity of the cave microbiome, suggesting that a same surface alteration might involve a subset of cosmopolitan taxa widespread in each cave room. We tested this hypothesis in Lascaux, by comparing recent alterations (dark zones) and nearby unmarked surfaces in nine locations within the cave.ResultsIllumina MiSeq metabarcoding of unmarked surfaces confirmed microbiome heterogeneity of the cave. Against this background, the microbial communities of unmarked and altered surfaces differed at each location. The use of a decision matrix showed that microbiota changes in relation to dark zone formation could differ according to location, but dark zones from different locations displayed microbial similarities. Thus, dark zones harbor bacterial and fungal taxa that are cosmopolitan at the scale of Lascaux, as well as dark zone-specific taxa present (i) at all locations in the cave (i.e. the six bacterial genera Microbacterium, Actinophytocola, Lactobacillus, Bosea, Neochlamydia and Tsukamurella) or (ii) only at particular locations within Lascaux. Scanning electron microscopy observations and most qPCR data evidenced microbial proliferation in dark zones.ConclusionFindings point to the proliferation of different types of taxa in dark zones, i.e. Lascaux-cosmopolitan bacteria and fungi, dark zone-specific bacteria present at all locations, and dark zone-specific bacteria and fungi present at certain locations only. This probably explains why dark zones could form in various areas of the cave and suggests that the spread of these alterations might continue according to the area of distribution of key widespread taxa.

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Microscale dynamics of dark zone alterations in Lascaux Cave shows brutal microbial community collapse

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