Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: De novo transcriptome of Anisakis pegreffi at third larval stage

PROVIDER: PRJEB50955 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR8957802.fastq.gz	Fastqsanger.gz
	ERR8957992.fastq.gz	Fastqsanger.gz
	ERR8958482.fastq.gz	Fastqsanger.gz
	ERR8957833.fastq.gz	Fastqsanger.gz
	ERR8958426.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

De novo transcriptome of Anisakis pegreffi at third larval stage

Project description:De novo transcriptome of Anisakis pegreffi at third larval stage

| PRJEB51204 | ENA

Project description:Anisakis pegreffii third stage larvae

| PRJNA602791 | ENA

Project description:Transcriptional changes in the Anisakis pegreffii third larval stage during human dendritic cells host-parasite interactions

| PRJNA752284 | ENA

Anisakis pegreffii

Project description:Transcriptional changes in the Anisakis pegreffii third larval stage during human dendritic cells host-parasite interactions

| PRJNA752075 | ENA

Project description:Anisakis pegreffii microRNAs from third stage larvae and its released exosomes

| PRJNA786753 | ENA

De novo transcriptome assembly of Salamandra salamandra at the larval stage

Project description:De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage

| PRJEB51202 | ENA

De novo assembly of transcripts from RNAseq study to examine developmental regulation of Strongyloides stercoralis transcripts with a focus on infectious third-stage larvae

Project description:De novo assembly of transcripts from RNAseq study to examine developmental regulation of S. stercoralis transcripts with a focus on infectious third-stage larvae. Raw read files are part of the submission 'RNAseq of S. stercoralis PV001 strain developmental stages' accession E-MTAB-1164, associated ENA accessions are included where appropriate .

2012-06-30 | E-MTAB-1184 | biostudies-arrayexpress

Cholangiocytes contribute to hepatocyte regeneration after partial liver injury in larval zebrafish

Project description:Liver possesses robust regenerative ability, characterized by flexibility in the cellular source of regeneration based on the extent of the injury. After partial hepatectomy or minor injuries, hepatocytes, the primary liver cells, undergo self-duplication to replenish the liver mass. In contrast, when the damage is extensive, or hepatocyte proliferation is impaired, cholangiocytes contribute to hepatocyte recovery. This current paradigm of regenerative flexibility in the liver has been established for animals with little or no growth. However, the regenerative mechanisms during periods of growth in young animals remain unexplored. Here, we establish two new partial liver injury protocols in the zebrafish model of rapid growth during late larval stage and observe emergence of de novo hepatocytes in the presence of spared hepatocytes. Using single-cell RNA sequencing and lineage tracing, we identify cholangiocytes as the source of de novo hepatocytes. Our study offers a new perspective on the current paradigm of liver regenerating by proposing cholangiocyte-to-hepatocyte transdifferentiation as the default mechanism of hepatocyte recovery in late larval stage zebrafish.

2024-11-13 | GSE272484 | GEO

Custom array CGH validation of de novo CNVs in CEU HapMap samples

Project description:This is the validation data for candidate de novo CNV calls made in the CEU Hapmap by Itsara et al., Genome Research 2010. In this study, de novo CNV calls were initially made with Illumina 1M SNP arrays. Validation of CNV calls was performed with Nimblegen custom array CGH using the extended CEPH pedigrees. A truly de novo CNV would be unobserved in the first generation (CEU trio parents), validated in the second generation (CEU trio children), and assuming no selective effects, transmitted to approximately half of the individuals in the third generation. We attempted validation of 4 de novo CNVs in 3 extended CEPH pedigrees: 1358, 1408, and 1459.

2010-09-01 | GSE23575 | GEO

A single cell atlas of the developing Drosophila ovary identifies follicle stem cell progenitors

Project description:We use single cell RNA sequencing approach to identify and characterize all cell types in developing Drosophila ovaries at late third instar larval stage (LL3).

2020-02-04 | GSE131971 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data