Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole genome sequences of historical Canadian Canis lupus

PROVIDER: PRJEB53842 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR9971090.fastq.gz	Fastqsanger.gz
	ERR9971091.fastq.gz	Fastqsanger.gz
	ERR9971092.fastq.gz	Fastqsanger.gz
	ERR9971093.fastq.gz	Fastqsanger.gz
	ERR9971094.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

DNA methylome of Canis lupus dingo

Project description:Using WGBS we investigated blood DNA methylation profiles of Canis lupus dingo and determined putative regulatory elements (unmethlated regions (UMRs) and lowly methylated regions (LMRs).

2020-08-27 | GSE119099 | GEO

DNA methylome of Canis lupus basenji

Project description:Using WGBS we investigated blood DNA methylation profiles of Canis lupus basenji and determined putative regulatory elements (unmethlated regions, UMRs, and lowly methylated regions, LMRs).

2021-02-22 | GSE159396 | GEO

Canis

Project description:Canis lupus and Canis lupus familiaris Epigenomics

| PRJNA427383 | ENA

Project description:Canis lupus and Canis lupus familiaris Metagenome

| PRJNA871378 | ENA

Project description:Canadian Beluga (Delphinapterus leucas) whole genome sequences

| PRJNA1182041 | ENA

Canis lupus

Project description:Canis lupus Genome sequencing

| PRJNA181967 | ENA

Canis lupus

Project description:Canis lupus Genome sequencing

| PRJNA532581 | ENA

Project description:Canis lupus and Canis lupus familiaris gut Metagenome

| PRJNA871950 | ENA

Project description:Whole genome sequencing of Canis lupus familiaris - German Spitz

| PRJNA880041 | ENA

Composition and organization of active centromere sequences in complex genomes

Project description:We report the sequences bound to CENP-A in the dog genome (Canis familiaris) for high-throughput characterization of centromeric sequences. We compare these ChIPSeq reads (72 bp, single read) against a reference centromeric satellite DNA domain database for the dog genome, resulting in the annotation of sequence variation and estimated abundance of seven satellite families together with adjacent, non-satellite sequences. To study global patterns of sequence diversity and characterizing the subset of sequences correlated with centromere function, these sequences were evaluated relative to a comprehensive centromere sequence domain k-mer library. From this analysis, we identify functional sequence features from two satellite families (CarSat1 and CarSat2) that are defined by distinct arrays subtypes. Sequences bound to CENP-A in MDCK (dog) cell line

2012-07-23 | E-GEOD-38079 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data